Pedobacter roseus: H9L23_11310
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Entry
H9L23_11310 CDS
T06980
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
proe
Pedobacter roseus
Pathway
proe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L23_11310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proe03019
]
H9L23_11310
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_11310
Enzymes [BR:
proe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L23_11310
Messenger RNA biogenesis [BR:
proe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L23_11310
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9L23_11310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RAD51D_N
DUF5805
TFIIE_alpha
Cas3-like_C_2
HTH_41
Motif
Other DBs
NCBI-ProteinID:
QNN44615
UniProt:
A0A7G9QMP0
LinkDB
All DBs
Position
complement(2709614..2711506)
Genome browser
AA seq
630 aa
AA seq
DB search
MTAIEILQKYWGHQAFRPLQQDIITSVLEGNDSLALLPTGGGKSICFQVPALVKEGICIV
VSPLIALMKDQVENLKSKGIEAIAIYAGMGKREIDILLDNCIYGKIKFLYLSPERLLADL
VRVRISYMNVNLIAVDEAHCISQWGYDFRPPYQQIAKLREILPNVPVLALTATATDFVRK
DIIEKLEMKNPQVFVKSFARDNLSYVVFGNEDKYRKLIDICQNVKGTGLVYVRNRRETAE
VANFINRNQIKADFYHAGLERDVRFLKQEEWKNNKTRIMVATNAFGMGIDKADVRFVVHL
DLPESLEAYYQEAGRAGRDEKRSYAVLLANQSDILGLESRYLDSFPSPDEIRKTYHYLGN
YFQLAFGAGEGLTFNFDVADFCKRFNISVLKTISALKFLEHDGYLTLSESVFLPSRMMFI
ASHEDIYRFQIENRAYDSIIKTILRSHGGAFDGFVKINEADLAKKTGLSYKEIVALLNKL
QSIELLTYIQQTDQPQLQYVRSRADMDHFDLDVKYLGLRKEILHKQINAVVAYASSNLCR
SVQLLNYFDEHHATKCGVCDVCLAEKRAENQSQMGEEIEFEIISLLQQQPLSLDDLVTNI
KNGAEAERIDAIRELLDAGKIKTDGKKYYL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaatagagattttacaaaaatattggggacaccaagctttcaggccgctacaa
caggatattattacctctgttttagaaggaaatgacagtttagcgctgttgcctacgggt
gggggcaaatcgatctgttttcaggttcctgccttagtcaaagaaggaatctgcattgta
gtttctcccttaattgccctgatgaaagatcaggtagaaaacctcaaatcgaaagggatc
gaagccattgccatctatgcggggatggggaaacgtgaaatcgatattttattggacaac
tgcatttacggcaaaattaaatttctttatttatcgccagagcgtttattagctgattta
gtgcgcgttcgcatttcgtacatgaatgtaaacctgattgcggttgatgaagcacattgt
atttcgcaatggggttacgatttccgtccgccgtaccagcaaattgctaaactccgcgaa
attcttcctaatgttccggtgctggcacttaccgccacagcaactgattttgtaaggaag
gatattatcgagaaactggaaatgaaaaacccgcaggtttttgttaaaagttttgccagg
gacaatctgagttatgtggtttttggtaatgaagataaatacagaaaactcatcgatatc
tgccagaatgtgaaaggaacaggactggtttacgtgcgtaaccgcagggaaactgctgaa
gtagctaattttattaatagaaaccagattaaagccgatttttaccatgcagggttagaa
cgcgatgttcgtttcctgaaacaggaagagtggaaaaacaataaaacccgcattatggtg
gctaccaatgcttttgggatgggcatcgataaagcagatgttcgttttgtggtgcattta
gacctgcccgaaagtctggaagcttattatcaggaagcaggaagggcaggacgcgatgaa
aaaaggagttatgccgttttattggccaatcaatctgatatccttggcttagaatcccgg
tatttagatagctttccttcaccggatgaaatcaggaaaacctatcattatctgggcaat
tattttcaactggcatttggcgccggcgaaggcttaacctttaattttgatgttgctgat
ttttgtaagcgttttaatatcagtgtattaaaaacgatttctgcccttaagtttttggag
catgatggttacctcaccttatcagaaagtgtttttttaccttcaaggatgatgttcatc
gccagccatgaagatatttaccggttccagatcgaaaacagggcttatgatagcattatc
aaaaccattctgcgctcgcatggcggtgcttttgatggttttgtgaaaatcaatgaagcc
gatctggccaagaaaaccggactttcttataaagagattgtcgcgctccttaataaattg
caaagcatcgaattgcttacctatattcagcaaaccgatcaaccgcaattgcaatatgtt
aggtcacgggctgatatggatcatttcgacctggatgtaaaatacctcggactgagaaaa
gaaattttacacaagcagattaatgcggtggtggcttatgcctcctctaatttgtgtagg
agtgttcagttgcttaactattttgatgaacaccacgctacaaaatgtggtgtgtgcgat
gtttgtctggcagaaaaaagagcagaaaaccaaagtcaaatgggagaggaaatcgaattt
gaaatcatttctttactgcaacagcagcctttaagtcttgatgatttggttaccaatatt
aaaaatggtgctgaagctgaaagaattgatgcgataagagaattattagatgctggtaag
attaaaactgatgggaagaaatattatctttag
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