Pedobacter roseus: H9L23_17420
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Entry
H9L23_17420 CDS
T06980
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
proe
Pedobacter roseus
Pathway
proe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L23_17420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proe03019
]
H9L23_17420
Enzymes [BR:
proe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L23_17420
Messenger RNA biogenesis [BR:
proe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L23_17420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ssDNA-exonuc_C
UvrD-helicase
SUa-2TM
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNN40898
UniProt:
A0A7G9QC23
LinkDB
All DBs
Position
4261913..4263214
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AA seq
433 aa
AA seq
DB search
MLFKELNLIEPILKALETEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPML
QLLHEKHINTKATKNIKALILTPTRELAIQIEESFKAYGRNLNLRHLVIFGGVNQHSQVE
ALRKGIDILVATPGRLLDLMNQGFISLNTIELFVLDEADRMLDMGFIHDVKKVVAKLPTK
RQTLFFSATMPDEIQKLANTILSSPTKVEVTPISSTAETIVQSVYFVDKPDKKKLLIHLL
EDKKIETALVFTRTKHGADRIVKDLAHAGIKSAAIHGNKSQNARQRALTDFKDRKIRVLV
ATDIAARGIDIDQLSHVFNFELPNIPESYVHRIGRTGRAGANGIAISFCDAEENEYLLDI
QKLIKITLPIVDDHPYPLSWESMLAKNQVKRKPQAQSKGGGGAKKSGDGNMSGKPRNASN
NRRFGGNRKRGDR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgttattcaaagaattaaacctcattgagccaattttaaaggcccttgagaccgaaggt
tatacacaacctacaccaatacaggagcaatccatcccaacaatattaaaaggcaaagat
ttattaggctgcgcacaaactggcaccggaaaaaccgctgctttcgccattccgatgttg
cagttattgcacgaaaaacacatcaataccaaagcaaccaaaaacataaaggctttaatt
ttaacgccaacacgcgagcttgccatccagattgaagaaagttttaaagcttatggccgt
aatttaaatttacgccacctggtaatttttggaggggttaaccagcactcgcaggttgaa
gcattaagaaaaggcattgatattttagtagcaacgcctggccgtttattagacttaatg
aaccagggttttatcagcttaaacaccatcgagctatttgtattggatgaagccgaccgt
atgctggacatgggctttatccacgatgtgaaaaaagtggtagctaaattgccaacaaaa
cgacagactttgtttttctcggctacaatgcctgatgaaatccagaaattggccaatacc
attttatcaagtccaacaaaagtagaggttacccctatttcttctactgccgaaacgatt
gttcaatcggtttattttgtagataagcccgataaaaagaaattattgatccaccttttg
gaggataaaaagattgaaactgctttggtttttacgcgtaccaaacacggtgcagacagg
attgtgaaagatttagcccatgcaggcataaaatctgctgcgattcacggaaataaatcg
caaaatgcgcgtcaaagagcattaacagattttaaagacagaaaaattcgtgttttagta
gcgactgatattgctgcacgtggtattgatatcgatcagttatcacatgttttcaatttc
gaattacccaatatccctgaatcttatgtacacagaattggccgtacaggtcgtgctggt
gcaaacggtatcgccatttcgttctgtgatgcagaagaaaacgaatacttactggatatc
cagaaactgattaaaattacgcttcccattgtggatgatcatccatacccgctaagctgg
gaaagcatgttggctaaaaaccaggttaaacgcaaaccacaggcacaatcgaaaggtggt
ggtggtgccaaaaaaagtggtgatggcaacatgagcggcaaaccgcgcaacgccagcaat
aacagaaggtttggcggaaacaggaaaagaggagatagataa
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