Pedobacter roseus: H9L23_22075
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Entry
H9L23_22075 CDS
T06980
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
proe
Pedobacter roseus
Pathway
proe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9L23_22075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_22075 (mfd)
Enzymes [BR:
proe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L23_22075 (mfd)
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9L23_22075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNN41756
UniProt:
A0A7G9QEI1
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All DBs
Position
5354750..5358088
Genome browser
AA seq
1112 aa
AA seq
DB search
MNIRDLINRYKTDDRVTQFTKALNATRNPKIQLKGLVGSADAIVALSSYFLLHKPIMFVL
PDREEAAYFQSDLESVLDKQVLLFPSSYRKSFDFTQVDTANVLARAEVLNELNHDSEYGK
IVVSYPEAIAEKVIDRSALEKNTLEISLGAKLGIDFINEFLIDYDFDRRDFVYEPGQFSI
RGGIVDIFSFSSDLPFRIEFFGDEVESIRSFEIESQLSVTDVKSLTIVPNVQAKFLTESN
ISILDYIDQDTQLWFKDVEFTLDIVKAGYKKAVELWKALPAADKTQNPEWIDPKFAFSDE
KLLGDHLQDFPLVEFGKQFFYKTDNRFEFETKPQPSFNKDFNLLIHNLKENEKAGIINFI
FTDSPKQIERLYAILEDIDKTAKFTPINSMLREGFVDPQIQTAFYTDHQIFDRYYKYKLK
KGYQKSQAITLKDLRELKSGDYVTHIDHGIGKYAGLEKVEVNGKTQEMIRLIYADNDLLY
VNINSLNRIAKYSGKESGVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIKLYALRKTQAG
TAFSPDSYLQTELEASFIYEDTPDQLKATQDVKKDMESPHPMDRLVCGDVGFGKTEIAVR
AAFKAVAEGKQAAILVPTTILALQHFKTFSSRLKDFPVTVDYINRFKTSKQIKDTLAEAA
AGKVDILIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTAKERLKAVRVNVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVSTELHVFNDKLIQEAVQFELDRGGQVFFIHNRVN
DLMQLGGMIQKLVPKARIGIAHGQLDGDQLEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKEAEFKGLFENEPA
RPFVGFTQVDTDLELYIPDAYITNITERYNLYTELSKLDNEGELAIFEKHLADRFGPVPP
QVKTMLSVVRLQWLGKKLGFEKISFKKNSLRGYFLSDKQSAYFDSNTFTKILTFAQNHPR
MCNLKEIKNTLRIAFDNVKTVEEAIETLELID
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgaacattcgagatttaataaacagatacaaaaccgacgatagggtaacccaatttacc
aaagcgttgaatgcaaccagaaacccaaagatacaattaaagggattggtgggctcagcc
gatgctattgttgccctttcttcttattttctattacacaaacccatcatgttcgttttg
ccggacagggaagaggctgcctatttccagtcggacctggaaagtgtgctcgataaacag
gttttactgttcccttcttcttaccgcaaatctttcgattttacccaggtagatacagcc
aatgtattggcccgcgcggaggtattgaacgaactgaaccacgattcggaatacggaaaa
attgtagtttcttaccctgaagccattgccgaaaaggtgattgaccgctcagcgctggaa
aaaaacacgttggaaatcagtcttggagctaagttgggtatcgattttatcaatgagttt
ttaattgattatgatttcgaccgtagggattttgtttacgagcccggccagttttccatc
cgcggtggtattgtagatatattttcattctcctctgacctgcctttccgtatagaattt
tttggcgatgaggtagaaagcatcagaagttttgagatcgaaagtcagctttcggtgacc
gatgttaaatctttaaccattgtacctaatgtgcaggccaagtttttaacggaaagcaat
atcagtattcttgattacattgatcaggatacccagctttggtttaaagacgtagagttt
actttagacattgttaaagcaggatataaaaaagctgtcgaactttggaaagctttgcca
gcggcagataaaacccaaaacccagagtggatcgaccctaagtttgcttttagcgacgag
aaattattgggcgatcaccttcaggatttcccattagtagaattcggcaaacagtttttt
tataaaactgataatcgtttcgagtttgaaaccaaaccccagccatccttcaataaagat
ttcaacctgctcattcataacctaaaggagaatgaaaaagcggggattatcaattttatt
tttaccgattcgccaaagcagatcgaacgtttatatgccattttagaggatattgataaa
acggccaagtttacaccaatcaatagcatgctgcgcgagggatttgttgatccgcagatc
cagacggcattttacaccgatcaccagattttcgaccgatattataaatacaagctaaaa
aaaggctaccagaaaagtcaggccattactttaaaagatttaagggagcttaaatccggc
gattatgttacccatattgatcacggaatcggcaaatacgcagggctcgaaaaggttgag
gtaaatggcaaaactcaggaaatgatccgcttaatttatgccgataacgacctgctttat
gtaaacatcaactccttaaaccgcattgccaaatacagcggcaaggaaagcggtgtaccc
aaaatgaataaactgggtacggatgcctgggacaagctaaaaaaaactactaaaaaaaaa
gttaaagatatcgcccgggatttgattaagctttacgctttgcgcaaaacccaggccgga
acggcattttctccggatagctatttacaaactgaactggaagcttcttttatttacgaa
gatacccccgatcagttaaaggcaactcaggatgtgaaaaaagacatggaatcgccacat
ccaatggaccgtttggtttgcggtgatgtaggcttcggaaaaacggagatcgccgtacgc
gcagcatttaaagcggtagcagagggcaaacaggcagcgatattggtgccgactaccatt
ttagccctacagcattttaaaaccttttcttcacgtttaaaagattttccggttacggtt
gattacattaaccgcttcaaaaccagtaaacagattaaagatactttggctgaagcagca
gcaggtaaagttgatattttaatcggaacacatcgtttactgagcaaggatgtaaagttt
aaagatctcggcatcatgattattgatgaagagcaaaaatttggcgttacagcaaaagag
cgtttaaaagcagtacgtgtaaatgttgataccttaacactaaccgcaacaccgattccg
aggacattgcatttctctttgatgggggcaagggatttatcgatcatcagcacaccgcca
ccaaataggcaaccagtaagtaccgaattgcatgtttttaatgataaattgatccaggag
gctgttcagttcgaattagaccgtggcggacaggtattttttatccataaccgggtaaac
gacctgatgcagttgggtggaatgattcaaaaactggttccaaaagcaaggatcggtatc
gcgcacgggcagttagacggcgatcaactggaagatgtaatgctcgatttcatcaatgga
gaaaaagatgttttagtagccacaactattatagaagcaggtttagatattccgaacgcc
aataccatcatcattaaccatgcgcacatgtttggtttaagcgatctgcaccagatgcgt
ggcagggttggccgaagcaataaaaaagctttctgttatttactctcaccacctttatct
actttaacctccgaagcccgtaagcgtttaagcgctatcgaagagttttctgatcttggc
agtggttttaatgtggccatgcgcgatttagatatccgtggaagtggtaatttactgggt
gcagagcaaagtggtttcattgccgaaatcggttttgaaatgtatcataaaatattagac
gaagccattcaggagttaaaagaggctgagtttaaagggctcttcgaaaacgaaccagcc
cgtccgtttgtgggctttacgcaggtagataccgatctggaattatatattccggatgct
tacattaccaatattactgagcgttacaatttatataccgagctctctaaactcgataac
gaaggcgaattggccatttttgaaaaacaccttgccgatcgtttcggaccggttcctcca
caggtaaaaaccatgctcagcgtggtgcgtttacaatggctgggcaaaaaattaggtttt
gagaaaattagctttaagaaaaacagtttacgaggatatttcttaagcgataaacaatcg
gcatatttcgattcgaatacctttaccaagattttaacttttgcgcagaaccacccacgt
atgtgtaatttaaaagagataaaaaataccttaaggattgcttttgacaatgtaaaaacc
gttgaggaagcaatagaaactttagaattaattgattaa
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