Pedobacter roseus: H9L23_24240
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Entry
H9L23_24240 CDS
T06980
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
proe
Pedobacter roseus
Pathway
proe02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H9L23_24240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
proe03021
]
H9L23_24240
Transcription machinery [BR:
proe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H9L23_24240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
GerE
HTH_24
HTH_Tnp_ISL3
Sigma70_ECF
Xre-like-HTH
HTH_11
MarR_2
HTH_28
TackOD1
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QNN42162
UniProt:
A0A7G9QFN7
LinkDB
All DBs
Position
5853790..5854368
Genome browser
AA seq
192 aa
AA seq
DB search
MSSYQTLSDHELFVLMQDGDKYAFEEIYERFNGLLYIYACKMVPDREDARDIVQEIFVYL
WSNPNIKIKSQLSGYLYTAVRYKVFDWLDKNKSRSNYLQSLENFADQGDYVTDNYIRERE
FASIIEKEVSLLPPKMRLIFEMSRQQHLSQKEIADILHLSDKTVKKQMSNALKVLRLKLT
SFLLLAIILMIR
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatcatatcaaacattaagcgatcacgaacttttcgtcctgatgcaggatggggat
aagtatgcgttcgaagaaatttacgaacggtttaacggtttgttatatatctatgcctgc
aaaatggtacccgatagggaagatgcaagggatattgtgcaggaaatttttgtatacctc
tggagcaaccctaatattaaaatcaaatcacagttatcaggctatctttatactgcagtg
aggtataaagttttcgattggctggataaaaataaatcgcgttccaattatttacaatca
ttggaaaattttgccgatcagggcgattatgttaccgataactatatccgtgaacgcgaa
tttgcttcaattattgaaaaggaagtatcgttactaccgcctaaaatgcgcctcatcttc
gaaatgagccgccagcagcaccttagccagaaagaaattgccgatattttgcatttatca
gataaaacggtaaaaaaacaaatgagcaatgcacttaaggttttgaggctaaaactcact
tcgtttttattgctggccataattttaatgatccgttga
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