Pedobacter roseus: H9L23_26295
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Entry
H9L23_26295 CDS
T06980
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
proe
Pedobacter roseus
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
proe03009
]
H9L23_26295 (rlmD)
Enzymes [BR:
proe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H9L23_26295 (rlmD)
Ribosome biogenesis [BR:
proe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H9L23_26295 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_25
MTS
PrmA
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QNN42538
UniProt:
A0A7G9QGR3
LinkDB
All DBs
Position
6318178..6319587
Genome browser
AA seq
469 aa
AA seq
DB search
MSRRKPGTVTIVPNVQIIDIAEEGKGVGKADELVIFVDKAVPGDVVDVRLTKKKKNFAEA
IIEQLHEKSALRTDPFCPHFGTCGGCKWQHMGYDAQLKFKQKNVEAALQRLGKIDTSGTE
PILGSAKNRYYRNKLEFTFSNKRWLEKTDVERDEDFDMNALGFHVPLRFDKILDIEHCYL
QDEPSNSIRNAVRKYALENDLSFYDLRNHEGVLRNLIIRTSTTGEVMVAVVFAYPEQAQV
DGLMNFLKAEFPQITSLLYIVNQKKNDTIFDQDVVLFSGRDHIFEEMDGIRFKIGVKSFY
QTNSEQAFELYKITRDFAGFKGDELVYDLYTGAGTIANFIAKNVKQVVGVEYVPTAIDDA
KFNSELNGIDNTIFYAGDMKDILTSEFILAHGKPDVVITDPPRAGMHADVVQRLLEMESE
KIVYVSCNAATQARDLELLKEKYDVVRIKPVDMFPHTQHVENVVLLKLK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaagaaaacccggtacggtaacaatagttccaaacgtacaaataatcgatatt
gctgaagaaggaaaaggtgttggcaaggccgacgaattggtcatttttgttgacaaagcc
gttcctggcgacgtagtagatgtgcgtttgaccaaaaagaaaaagaattttgctgaggca
atcatcgagcaactgcacgaaaaatcagcattgcgcaccgatcctttttgtcctcatttc
ggaacttgtggtggttgcaaatggcagcacatgggctacgatgctcaattgaagtttaag
cagaaaaatgtggaggccgctttacagcgtttgggtaaaatagatacttcaggtactgaa
ccgattttaggttctgcaaaaaacaggtattatcgcaataagctcgaatttacattttcg
aacaaacgttggttggaaaaaaccgatgtagaacgtgatgaagattttgatatgaacgct
ttgggttttcacgtacccctgcgtttcgataagattttagatatcgaacattgctatctt
caggatgagccttctaattcgatcagaaatgcagtgcgtaaatatgcattagagaacgat
ctgtcgttttacgatctccgcaaccacgaaggtgttttacgtaatctgattatccgaact
tctaccactggcgaagtaatggtggcagtggtattcgcttatccggagcaggcacaggtt
gatggtttgatgaatttccttaaagccgaattccctcagattacttctttattatacatc
gttaaccaaaagaaaaatgataccatttttgatcaggatgtagtattattctctggccgc
gatcatatttttgaagaaatggacggtatccgctttaaaattggggtgaaatctttttac
cagaccaattctgaacaggccttcgaactatataaaattacaagggatttcgctggtttt
aaaggcgatgaactggtttatgatttatatactggtgctggcactattgcaaattttatt
gcaaaaaatgtgaaacaggtggtaggggtagagtatgtaccaaccgcaattgatgatgca
aaatttaactccgaattaaatgggattgacaacacgatcttttatgccggagatatgaaa
gatatcctcacatcagaatttattctggcacatggaaaacctgatgtggtcattaccgat
ccgccacgcgcagggatgcatgctgatgtggtgcagcgcttgctggaaatggaatcggaa
aaaattgtttatgtaagttgtaatgctgctacacaggcacgtgatttagaactgttaaaa
gaaaaatacgatgttgtgcgcattaaaccggttgatatgtttccgcacacacagcatgta
gaaaatgtggtattgttaaagttaaaataa
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