Prosthecochloris sp. SCSIO W1103: OO005_11035
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Entry
OO005_11035 CDS
T09697
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
proi
Prosthecochloris sp. SCSIO W1103
Pathway
proi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OO005_11035 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
proi03021
]
OO005_11035 (rho)
03019 Messenger RNA biogenesis [BR:
proi03019
]
OO005_11035 (rho)
Transcription machinery [BR:
proi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OO005_11035 (rho)
Messenger RNA biogenesis [BR:
proi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OO005_11035 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Mor
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
UZJ38919
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All DBs
Position
complement(2392639..2393901)
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AA seq
420 aa
AA seq
DB search
MDINMLQKKKVHELNALAKEIGVVTAGLRKEELIYKIIEAQSQKGSNAENGRVMVNTGVL
QVIPEGYGFLRSANYNYLSSPDDIYVSPSQIKRFNMRTGDTVSGQVRAPKEGERFFALLK
INTIDGKDPEITRERPFFDNLTPLFPRERLRLETTQNEYCGRIMDIFTPIGKGQRGLIVA
QPKTGKTMLLQTVANAIIKNHPEVYLIVLLIDERPEEVTDMERSVPAEVVSSTFDEDPER
HVQVADMVLEKAKRLVEVGTDVVILLDSITRLARAHNTIIPHSGKILSGGIDANALTKPK
RFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLSERRIFPAI
DILRSGTRKEELLFSQEELSRTWLLRKYLADKNPIECMEFMREKIVETRDNKEFFKYMNA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
ctggacatcaacatgctccagaaaaagaaggttcatgagttgaatgctttagccaaagag
ataggtgttgttacagcaggattacgaaaggaggaattgatatacaaaataatcgaggcg
cagtcccagaaaggaagtaatgcggaaaacggtcgggtgatggtcaataccggagtgctt
caggttattccggaagggtatgggtttcttcgttctgccaattacaactatttgtcatct
cccgatgacatttatgtttcaccttcccagatcaagcgtttcaatatgaggaccggtgat
accgtgtccgggcaggttcgtgccccgaaagaaggcgaaaggttctttgcgctgttgaaa
atcaatacgattgacggcaaggatcccgagattacaagggaacggccgtttttcgataat
cttactccgctgtttccgcgcgagcgcctgaggctcgagactacgcagaacgaatattgc
ggaaggattatggatatttttactcctatcgggaaagggcagagagggttgatcgttgca
cagcccaagaccggtaagacgatgttgctacagacggttgcgaatgcgattatcaaaaac
catcccgaggtttatcttatcgttctgcttattgacgagcgccctgaagaggttaccgat
atggaaagaagcgttccggcagaagtggtgagttccacctttgacgaagaccctgaacgc
catgtacaggttgccgatatggtgctcgaaaaggcaaagcgtcttgttgaagtcgggact
gatgttgttatattgcttgactcgataacccgccttgcaagggcacataataccattata
ccccattcaggtaaaatcctttcgggtggaatcgatgcaaatgcgctgactaagccgaag
agatttttcggtgcggcaagaaatattgaagaggggggaagtctcaccatcatcgcgacg
gcgcttgtcgataccggttcgagaatggacgatgttattttcgaggagttcaagggaacg
ggtaacatggagcttgttcttgacagacgcctttcggagcgtcgtattttcccggctatt
gatattttacgttcaggcaccaggaaagaggagctgcttttttctcaggaagagctttcg
aggacatggcttttgcgaaaatatcttgctgataagaatccgattgagtgcatggagttc
atgcgtgaaaagatcgttgagacaagggacaacaaggagtttttcaagtatatgaatgct
tga
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