Prosthecochloris sp. SCSIO W1103: OO005_11725
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Entry
OO005_11725 CDS
T09697
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
proi
Prosthecochloris sp. SCSIO W1103
Pathway
proi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
proi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OO005_11725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
proi03021
]
OO005_11725 (rpoC)
03400 DNA repair and recombination proteins [BR:
proi03400
]
OO005_11725 (rpoC)
Enzymes [BR:
proi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OO005_11725 (rpoC)
Transcription machinery [BR:
proi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OO005_11725 (rpoC)
DNA repair and recombination proteins [BR:
proi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OO005_11725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
E1-N
Motif
Other DBs
NCBI-ProteinID:
UZJ37403
LinkDB
All DBs
Position
complement(2534171..2538673)
Genome browser
AA seq
1500 aa
AA seq
DB search
MIFSQGASPIKGDFSKIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTMKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERIIYYEVYVVINPGEPGEKQGIKKLDRLTEEQYFQIITEYEDNQDLD
DNDPAKFVAKMGGEAIHTLLKGLDLDSQAVELRKILRESGSEQKKADALKRLKVVEAFRK
SYEPVKKSRKKSTGLFPEDEAPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFV
IRRLVERGIAKSVKSAKKLIDKKDPVVWDVLEKVIDGRPVLLNRAPTLHRLGIQAFQPVL
IEGKAIQIHPLVCTAFNADFDGDQMAVHVPLSQEAQLEATLLMLSSHNLILPQSGKPVTV
PSQDMVLGMYYLTKSRLGEKGQGQLFYGTEEVMIAYNEQRIGLHALVFVKYSGKIEQKFD
PLRMLDIIPEENVEQKEWLKKEIEESRILVTTVGRVIFNQYVPEKIGFINKVIDKKGAKE
LISKLSGEVGNVAAAEFLDNIKEVGFHYAMKGGLSIGLADAIIPEAKIQHIKKATRESNK
IVREYNRGTLTENERYNQIVDVWQKVTNLVAEESYQKLRKDRTGFNPLFMMLDSGARGSR
EQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFVSTHGARKGLSDTS
LKTADAGYLTRRLHDVAQDVIVTEEDCGTTRGIHVERGIEEETGGQIKFSEKIRGRVASR
DIIDTLADEIIVPAGGIITDEIADAIQKNVGVIEADIRSVLTCEAKQGICSKCYGTNLAV
HKLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAQGGIAETETKSSCEGQVEFESIRS
VEQEAINEDGVPEIQILVIQKNGKINIVDPDSGKILKRYEVPHGAHLASKNGDLVKKDDV
LFSSEPNSTQIIAEIEGQVKFVDIEKGVTYKEEVDPQTGYVQHVIINWRTKLRASETREP
RILIVSDAGEILKTYPVPIKSNLFVEDGRRVKVGDVMAKVPRNLDRVGGDITAGLPKVTE
LFEARIPSDPAIVSEIDGYVGFGPQRRSSKEIKVKNEFGEEKNYYVQVGKHVLANEGDEV
NAGEPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQK
VRVEEPGDTELLSGDLIDRTVFIEANRDVAEKVRVTERGDAPPRIQEGQLYKMRDITKLN
RELRRNSKKLIAIEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGKI
DNLAGLKENVIVGKLIPAGTGLKKYRKLNLAFPENGEGSTAAFESEDADLDGSVIEEETE
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atgattttttcacagggagcttcaccgataaagggtgatttttcaaagataaaattcagc
atcgcatctcctgaaagcattctcgcacattcaagaggtgaggtactcaaacccgaaaca
ataaactatcgcacgttcaagccggaaagagacggactgatgtgtgagaaaattttcggt
ccgacaaaagactgggaatgctattgcggtaagtataaacgtgtcaggtacaaaggtatt
atctgtgaccgttgcggtgtggaagtaaccatgaaaagcgttcgtcgcgaacgcatgggg
catatttctctggcggttccagttgtgcacacctggtttttccgttctgtccccagcaag
ataggtgcattgctcgacctttccaccaaggagctcgagcgtattatttactatgaagtt
tatgttgttatcaaccctggggagccgggagaaaagcaagggatcaaaaagctcgatcgt
ctgacggaagagcagtatttccagattataaccgaatacgaggataatcaggatcttgac
gataatgatccggcaaagttcgtcgccaagatgggcggtgaagcgattcacacgctgctc
aaagggctcgacctggattctcaggctgtcgagctgcgcaaaattctccgggaaagtggt
tcggagcagaaaaaagccgatgcgctcaaacgtttaaaggttgtcgaggcgttcaggaaa
agttatgagccggttaagaaatcgaggaaaaagtctacagggttgtttcccgaagatgag
gcgccggaaccatatgtttatgagggtaacaaacccgagtacatggttatggaggttatt
ccggtcattccgcctgagctgcgtcctcttgtgccgctggaaggcggacggtttgccaca
tccgatctcaacgatctttaccgcagggtcatcatccgcaacaaccgtctgaagaaattg
atcgacattcgtgctccggaagtcattctgcgtaacgagaaaagaatgttgcaggaagcc
gttgatgcgctgttcgataactcgcgcaaggccaacgctgttaaaaccggtgaatccaac
cggccgctgaaatccctttccgatgccttgaaaggaaagcaagggcgttttcgtcaaaac
ctgctcggtaagcgtgtcgactactccggcaggtcggttatcgttgtagggcctgagctg
aaactacatgagtgcggattaccgaaaagcatggcgatcgaactgttccagccgtttgtc
atcaggcgtctggtcgagcggggtattgcaaagtcggtaaaatcggccaagaagttgatc
gataaaaaagatccggttgtctgggacgttctggaaaaagtcatcgacggtcggccagtg
ctccttaaccgtgcaccgacactgcatcgccttggtattcaggcttttcagccggtcctg
atcgagggcaaggcaatacagatacatcctttggtttgtactgcgttcaacgctgacttc
gacggtgaccagatggcggtacacgtacccctgtcacaggaagcacagctcgaggcgact
cttttgatgctttcgtcgcataacctcatccttccgcagtcgggtaagccggttaccgtt
ccttcacaggatatggttcttggcatgtactacctcacgaaatccaggcttggagagaaa
ggtcagggacaactgttttacggtaccgaggaggtcatgattgcctataatgagcaacgt
atcggtcttcatgcacttgtctttgttaaatacagcggtaaaatagagcagaagttcgat
cctttacgaatgctcgatatcattccggaagagaacgttgagcagaaagaatggctgaaa
aaggaaatcgaagaaagcagaatccttgtaacgaccgttggccgtgtgatcttcaaccag
tatgttccggaaaagatcggcttcatcaacaaggttatcgataaaaaaggcgcaaaggag
cttatctccaaactttcaggagaagtgggcaatgttgcggcagcagagtttctcgataac
atcaaggaggttggtttccattacgccatgaaaggcggtctttctatcggccttgccgat
gcaatcattcccgaagccaagatccagcatatcaagaaagctacaagggaaagtaacaag
attgtcagagagtataaccgaggtacgctgacggaaaacgaacggtataaccagattgtc
gatgtttggcagaaagtgacgaaccttgtcgccgaggagtcatatcaaaagcttcgtaaa
gaccgtacaggcttcaatccgttgttcatgatgcttgattccggtgctcgcggctcgaga
gagcaggttcggcagctaaccggtatgagagggcttattgcccgcccgcagaagtccatg
tcagggcagcccggcgagattatcgagaatcctattatttcgaaccttaaagaagggttg
accgttctcgaatattttgtctcgacgcatggtgcccgtaaaggtttgtccgatacatcg
cttaaaactgctgatgccggttacttgacgaggcgactgcacgatgttgcgcaggatgtc
atcgttaccgaggaggattgcggtacgacaagggggattcatgttgagcgtggcattgaa
gaagaaacaggtggccaaatcaagttcagtgaaaaaattcggggccgtgttgcttcccga
gacattatcgacacgcttgccgatgaaatcattgttccggcaggaggaatcatcacggat
gaaattgccgatgccattcagaaaaatgtaggtgttatagaggctgatatccggtcggtg
ttgacctgtgaagccaaacaggggatatgctccaaatgttacggtaccaacctcgcggta
cacaagcttgtcgaaatcggtgaggctgtcggtgtcattgccgcacaatccattggcgaa
ccgggtacccagctcacccttcgtactttccatcaggggggaacggcacagggtggtatt
gcagaaacggaaaccaagtcttcctgcgaaggccaggtagagtttgagagcatcagaagc
gttgagcaggaagccatcaatgaagacggtgtgccagaaatccagatcttggttattcag
aaaaacggaaaaatcaacattgtcgatcctgattcaggaaaaatactgaaacgttatgaa
gtgcctcacggtgcacatctcgcatccaaaaacggcgaccttgtcaaaaaggacgatgtt
cttttcagcagcgagcctaacagtacgcagattatcgccgaaatcgaggggcaggtaaag
ttcgtcgatattgaaaaaggggttacctacaaggaagaggttgatcctcagaccggttat
gtacagcatgtgattatcaactggcgtaccaagttacgggcttctgaaacaagagagcca
aggattttgattgtaagcgacgcaggagagatcctcaaaacctatcctgttccaatcaag
tcgaacctctttgtcgaggacggcagaagggttaaggttggtgatgtcatggctaaagta
ccgagaaaccttgaccgggtcggcggtgatattaccgcgggtcttccgaaagttaccgaa
cttttcgaggctcgtattccttcggatccggcgattgtatccgagattgacggttacgtc
ggttttggcccacaacgcaggagtagtaaggagatcaaggttaaaaacgaatttggagag
gaaaagaattattatgtacaggttggtaaacatgttcttgccaatgaaggcgacgaagtc
aacgcgggagaaccccttaccgatggtgctgtatctccgcaggatattctgagaattcag
ggaccgaatgctgtacagcagtatttggtgaatgaaattcagaaggtataccagatcaac
gccggtgttgaaatcaatgacaaacatcttgaagtgatcgttcgccagatgttgcagaag
gtgagggttgaagaaccgggagataccgaactgttgtcgggtgatctcatcgatagaacc
gtgttcatcgaagctaacagggatgtcgccgaaaaggtacgggtgacagagcggggagat
gctccgccgagaattcaggaaggtcagctgtacaaaatgcgggatataaccaaactcaac
agggagcttcgcagaaacagcaaaaaattgattgctatcgagcccgcgctgcaagcgaca
tctcatccggttctgcttggtatcacaagtgctgccctgcagactgaaagcgttatttcc
gctgcatccttccaggaaaccacaaaggttcttaccgatgcggcagtagccggtaaaatc
gacaatctggctgggttgaaagaaaacgtcattgtcggtaagctcattcctgccggtacc
ggattgaaaaagtatcgtaagctgaaccttgcgtttcctgaaaacggtgaaggcagtacc
gctgcttttgagagtgaagacgctgatctggatggatcggttattgaagaagagactgaa
tag
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integrated database retrieval system
