Proteus sp. NMG38-2: LG402_01265
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Entry
LG402_01265 CDS
T11216
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pron Proteus sp. NMG38-2
Pathway
pron03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pron00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG402_01265 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pron03019
]
LG402_01265 (rnr)
03016 Transfer RNA biogenesis [BR:
pron03016
]
LG402_01265 (rnr)
Enzymes [BR:
pron01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LG402_01265 (rnr)
Messenger RNA biogenesis [BR:
pron03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG402_01265 (rnr)
Transfer RNA biogenesis [BR:
pron03016
]
Prokaryotic type
tRNA degradation factors
LG402_01265 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Hrs_helical
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
UDN36318
LinkDB
All DBs
Position
250957..253446
Genome browser
AA seq
829 aa
AA seq
DB search
MSKDPFQDREAEKYASPIASREYILEEMKKRTAPMSREDLAQALKISGEEDLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLWKGKVIGHRDGYGFLRAEGQKDDLYLSQDEMKKTMH
GDVILAQPLGMDRKGRREGRVVRVIEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
EDIMGARMGNVVVVEVTTRPTRRTQAVGRIVEILGETMGTGIAVEIALRTHEIPYTWPAK
VTKEVADLKEEVPESAKEGRVDLRDLPLITIDGEDARDFDDAVYCQRKKGGGWRLWVAIA
DVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
EQGRLSSYRFYEAVMSSHARMTYTKVWKIIQGDEELREHYKPIVKDIEHLYELYQALDKA
REQRGAIGFESEEAKFIFNAERRIERIEPVVRNDAHKLIEECMILANIAAARFVEKNEEP
ALYRIHDKPKEESVLNLRSVFNELGLTLPGGLTPEPADYARVMKEVEDRPDREMLQTMIL
RSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLALHRAIKYQIAKEEGHGSQRWTPT
GGYHSDMDTMLQLGEHCSLTERRADEATRDVADWLKCDFMLDQIGQQFTGIITSVTGFGF
FVRLNDLFIDGLVHVSTLNNDYYQYDNVGQRLIGESSGQVYRLGDEVEVKVEAVSMDERT
IDFSLISTTRTARNPGKTARVRGLKGEKDKKNASSSKSRRRDASKDKNFEPDSAFKKGKS
AKGNANKDRAVKDQVAKDKASSKRKKASSQTKKIEAKLKAKRAAKRDNA
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaagatagagaagcagagaaatacgcctctccaattgctagt
cgcgaatatattttagaagaaatgaaaaagcgcacggcccctatgagtcgtgaagattta
gcgcaggcgttaaaaatttctggagaagaagacctagaagcgttacgtcgtcgtttaaga
gcgatggagcgtgatgggcagttagtttttactcgccgccaatgttatgcgttacctgag
cgtcttgatttatggaaaggtaaggtaatcggtcaccgtgatggttatggttttttacgc
gcagaaggtcaaaaagatgatctttacctttcacaagatgaaatgaaaaaaaccatgcat
ggtgacgttattttagcccaacctttaggtatggatagaaaaggtcgtcgtgaaggtcgc
gtagtgcgtgttattgaaccaagaaataaccaaattgttggtcgctattttattgaatct
ggtatggggtttgttgtaccggatgatagccgcttaagttttgatattcttatccctaaa
gaagatatcatgggtgcgcgtatgggtaatgtggtggtggttgaagtcacaacaagacca
actcgacgcacacaagcagtaggccgtattgttgaaattttaggtgaaaccatgggaact
ggtattgcggtagaaatcgcattacgtactcatgaaatcccttatacatggcctgcaaaa
gtgacaaaagaagttgctgatttaaaagaagaagtgcctgagtcagctaaagaaggacgt
gttgatttacgtgacttacctttaattactattgacggtgaagatgcgcgagactttgat
gacgctgtttattgtcaacgtaaaaaaggtggcggttggcgtttatgggttgcgattgcc
gatgttagctattatgtacgcccacaaacagcgttagatacagaagcacgtagccgagga
aactccgtttatttcccttctcaagttgtaccgatgttgccagaagttctgtctaatgga
ttgtgttcattaaatccacaagttgaccgtctatgtatggtctgtgagatgactgtttct
gagcaaggacgtctttcttcttatcgattctatgaagcggtgatgagttctcatgctcga
atgacctacaccaaagtgtggaagatcattcaaggtgatgaagaactacgtgaacactat
aagcctatcgttaaggatattgagcatctgtatgagttataccaagcgttagataaagca
cgcgaacagcgcggtgcaattggtttcgaatcagaagaagcgaagtttatctttaatgct
gagcgtcgtattgagcgtattgaaccggttgttcgtaatgatgcacacaaattgattgaa
gagtgcatgatcttagcgaatatcgctgcagctcgttttgttgagaagaatgaagagcct
gcgttataccgtattcatgataaaccaaaagaagaaagcgtactgaatttacgttctgtc
tttaatgaattaggtttaacgctacctggtggcttgacaccagagccagcagattatgcg
cgtgtcatgaaagaggttgaagacaggcctgatcgtgaaatgctacaaactatgattttg
cgttccatgaaacaggcgatttacgatcctgaaaaccgtggacactttggtttagcactg
aagtcttatgcacactttacctcaccaattcgtcgttatcctgatttagccttgcatcgt
gcaattaaatatcagattgcgaaggaagaaggccacggttcacaacgttggacaccgaca
ggtggttaccatagtgatatggataccatgttgcaattaggtgagcactgttctttaacg
gagcgccgtgctgatgaagcaacaagagatgtggctgattggctgaaatgtgactttatg
ctggatcaaattggtcaacaatttaccggtattatcaccagtgtaacgggctttggtttc
tttgttcgcttaaacgatctgtttatcgatggtttagtgcatgtttctacattaaataat
gattactatcaatacgataacgttgggcagcgtttaattggtgagtcttcaggacaagtc
tatcgccttggtgatgaagttgaagttaaagttgaagcagtcagtatggatgaacgtact
atcgatttttccttaatttcaacaacacgcacagcgcgtaacccgggtaaaacagcacga
gttcgcgggttaaagggcgaaaaagacaagaaaaacgcaagttctagtaagtctcgacgt
cgtgatgcaagcaaagataaaaactttgagccagatagcgcctttaaaaaaggaaaatca
gctaaaggcaatgcaaacaaagacagagctgtaaaagaccaagttgctaaagataaagca
agtagtaaacgcaagaaagcatcatcacaaaccaaaaagatagaagcaaaacttaaagct
aaacgcgcagccaaacgcgataacgcataa
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