Paenibacillus roseopurpureus: MJB10_01000
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Entry
MJB10_01000 CDS
T10989
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
proo Paenibacillus roseopurpureus
Pathway
proo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
proo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MJB10_01000 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proo03400
]
MJB10_01000 (mfd)
Enzymes [BR:
proo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJB10_01000 (mfd)
DNA repair and recombination proteins [BR:
proo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MJB10_01000 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Tcp10_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WNR44770
UniProt:
A0AA96LU95
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All DBs
Position
222057..225578
Genome browser
AA seq
1173 aa
AA seq
DB search
MQALIGAFSADTDFQTIVTGIKSEMKEQLIAGLTGSSRQIMLASLVRDLERPLFVVTHNM
FAAQKIAEDLLECLSPEEVLLYPAQELLTIEEAASSPEMLAQRIDVLTKLAGGYRGVVIA
PFAGVRRLLPIKQVFEESRVTINVGDSVQLDELLASLSSLGYERVERVETKGEMSVRGGI
LDLYPLTSENAIRIELFDIEVDSIRTFDVSDQRSIDKLTSVTITPCREIQADRKRLQSAA
QHAHELLQAQLAKMTERSAKDKLLEGIGHDIERLREGQTFPGIYKYISLLYTERQTLIDY
MPKDSILIIDEPARLLETAKQLERDEAEWMMHALTEGKSLPAFVLSKTYETLLHRRPFPT
LYMSLFLRQVAGIQPQNIVNFVCRVMQNFHGQMNLLKAEMERWKKNGSKVILLANGEERA
ERVRRVLSDYQIEVPEIVDGNLQTGFEMPSIHLVVITEGEIFTQKQRKARKVEKKLENAE
RIKSYQELKVGDYVVHVNHGIGKYVGIGTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDLI
QKYVGSEEKEPKVYKLGGADWARVKSKARASVKDIADELIKLYAERQAAKGYGFGKDSSY
QNEFEAMFPYDETRDQLRAIEEIKKDMEKERPMDRLLCGDVGYGKTEVAVRAAFKAAIDG
KQVAVLVPTTILAQQHYETFRERFSGYPFNVKVLSRFRSKKEQTEVMKGVKKGTVDVVIG
THRLLSQDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVVEYGPTLVREAIERELAREGQVYYLYNRVQGITQIADQI
SMMIPDARVTVAHGQMGEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD
LSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIAKLKLEIDGDTARPEPDWHTSIDIQL
DAYLPSDYIYDSMQKIEIYKKVAAIRTLEEAADLHDELVDRFGDLPQAVFNLLTVARLKA
YGSEYRIETISQKGEDYLIKVHIDQNGRLDGQKLLALSKGFDGRIKLNADPQLLIVIRVK
GLKPEASIELLEKFLVQYKDVLKTKGELQDVAK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagctttaattggagctttttctgcggatactgactttcaaacgatcgtgacaggc
atcaagtccgagatgaaagagcagctcattgctggtttgacgggctcctccaggcaaatt
atgctggcctcacttgtgcgggatttggagcgtccgctttttgttgttacccacaatatg
ttcgctgctcagaagatcgcagaagatctgctggaatgcttatcgcccgaggaagtgctg
ctctatccggcacaagaacttcttacgattgaagaggcggcgtcgagcccagaaatgctg
gcgcagcggattgatgtattaaccaagcttgctggcggataccggggcgtcgtcatcgcg
cctttcgcgggtgtgagaagattgctgccgatcaagcaggtgtttgaggaatcgcgtgtc
acgattaacgtcggagactcggtgcagctagacgagctgttagcttccttatcgagcctg
ggctacgagcgagttgagcgcgtagagacgaaaggcgagatgagtgttcgcggcggtatt
ttggatctgtatccattgacgtcggagaatgcgatacgtattgagctttttgatattgaa
gtggactctattcgaactttcgatgtaagtgaccagcggtcaattgacaaattaacgtcg
gtgacgatcactccgtgccgtgagattcaagccgatagaaagcggttacaatcagcagcg
cagcacgcgcatgaacttctgcaagcgcagctggctaagatgaccgaacgttcagcgaaa
gacaagctgcttgaaggcatcggccacgacatcgagcgcttgcgcgaagggcagacattc
cctggcatttataaatatatttctctcctttatacggaaagacagacgctcattgattac
atgcccaaggattcgattcttatcatcgacgagcctgctcgcttgttagaaacggcgaag
cagttggaacgcgatgaagccgaatggatgatgcatgcattaactgaggggaagagcttg
ccggcttttgtgctgtccaaaacgtacgaaaccttgctgcatcgcagaccttttccaacg
ctgtacatgtccttgttcctgcgtcaagtcgcgggcattcagccgcaaaacatcgtgaat
ttcgtatgccgtgtgatgcaaaatttccacgggcagatgaatttactcaaagcggaaatg
gaacgctggaagaagaatggcagcaaagtcatccttctcgccaatggcgaagagcgtgcg
gaacgggtgcgccgcgtcttaagcgattatcagatcgaagtgccggagattgtcgacgga
aacttgcagacgggcttcgagatgccgtccattcatctggtcgtcattacggaaggcgag
atctttactcagaagcagcgcaaagcacgtaaagtggagaagaagctggagaacgcggag
cggattaagagctatcaagagctaaaagtcggcgactacgttgtccacgtgaatcacggg
atcggtaaatatgtaggcatcggcactttagaggttggcgggattcataaggattatctg
cacattatgtatgcaggcggcgataagctgtctgtgcctattgatcagattgatttgatt
cagaaatatgtcggctctgaagagaaggaaccgaaagtctataaactcggcggcgctgat
tgggcacgtgtgaagagcaaggcccgcgcgtccgtcaaggatatcgctgatgagctgatt
aagctgtatgctgagcgtcaagctgcgaaagggtatggcttcggtaaagacagctcgtac
cagaatgaattcgaagcgatgtttccttacgatgaaacgagagaccagctgcgcgctatt
gaagagatcaagaaggacatggagaaagagcgtccgatggaccgtttgctctgcggtgac
gtgggctatgggaagaccgaagttgctgttcgcgctgccttcaaggctgcgattgacggc
aaacaggttgctgtgctcgttccgacgacgattctggcgcagcagcactacgaaacgttc
cgtgagcgcttctcggggtatccgtttaacgtgaaggtactaagccgtttccgttccaag
aaggaacagacggaggtcatgaaaggcgtcaagaagggtaccgtggatgttgtaatcggg
acgcaccgcctcttgtcgcaggatgtccagttcaaggatctcggcctactgatcgtggac
gaggagcagcgtttcggcgtgtcccacaaagaaaagctgaagcggctcaagacgaatgtg
gacgtgcttacgttgacggcgaccccgattccgagaacgctgcatatgtccatgttgggt
gtgcgagatttatcggtcattgagacgccgccagagaaccgtttccctgtacagacgtac
gtggttgaatacgggccaaccttggtgagagaggcgattgagcgcgaattggcgcgtgag
ggccaagtgtattacctatacaatcgtgtacaaggcattacgcaaattgcggatcaaatc
tccatgatgattcccgatgcccgtgtcaccgtggcccatggtcagatgggtgagcaggaa
ctggaaaagacaattctcgatttcttagacggcgagtatgatgtcctggtttcgacaagc
attattgagacgggtgtcgatatccccaacgtgaataccttaattgtgcatgacgcggat
aaaatggggctttcccagctgtaccagctgcgtggtcgtgttggccgatcgaaccgtgtt
gcttatgcttatttcacgtatcagcgcgataaagtgctgacagaagtggcggagaaacgg
cttcaggcgattaaagagtttacagaacttggctcaggctttaaaattgcgatgagggac
ttgtcgattcgtggcgcaggtaacttgcttggtgctgaacagcacggttttattgcttct
gtcggttttgatttatactcgcaaatgcttgcggaagaaattgcgaagctgaagctggaa
atagacggagatacggcgcggccagaaccagattggcatacgtcgatcgacatccaattg
gatgcctatctgccatctgactacatctatgacagcatgcagaaaattgaaatttacaaa
aaagtggccgccattcgtacgctggaagaagccgcggatttgcatgatgagctcgtcgac
cgtttcggcgacctgccgcaggccgtgttcaacctactgacagtggctcgtttgaaagca
tacggttcggaataccgcattgaaacgatcagccaaaaaggggaggattacctaatcaag
gtgcatatcgaccagaatggcagactggatggtcagaagctacttgctttatccaaaggc
tttgatggtcgtatcaaattgaacgcagatccgcagctcttaattgttatccgcgttaaa
ggcttgaagccggaagcctccatcgaattattggagaaattcttggtacaatataaggat
gttttgaaaacgaaaggggaattacaggatgttgccaagtga
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