Propionimicrobium sp. PCR01-08-3: QQ658_00755
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Entry
QQ658_00755 CDS
T09133
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
prop
Propionimicrobium sp. PCR01-08-3
Pathway
prop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QQ658_00755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prop03400
]
QQ658_00755
Enzymes [BR:
prop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QQ658_00755
DNA repair and recombination proteins [BR:
prop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QQ658_00755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WIY82926
UniProt:
A0A9Y2RWL8
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All DBs
Position
complement(151174..153891)
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AA seq
905 aa
AA seq
DB search
MATKRQTIEVGGLKLAVSNLDKVMYPETGTTKGDVLDYYLQIAPVLVPQAAWRPATRKRW
VNGVGTADDPGEVFFRKDLEDGTPGWVPTGKIVHKERTNVYPLANNAAVLAWFAQLAALE
VHVPQWRFGSDGAPRNPDRLVLDLDPGEGAGLKECVAVAHMIRDILTDMKLDAVPVTSGS
KGIHLYAPLDGRTTSDQVAAVAKQLAESLEKEAPKQVIAIQKRAERAGKVLVDWSQNNAA
KTTVCPYSLRGRMRPTVACPRTWDELDDPKLAQLDYREVLKRVADGLDPIADQGWPFDQA
PEAPKKSRSADSGTTDKLTRYREKRDANLTPEPVPEASGKSTGGKSKARETHKQGTSSTS
KQEDSADSSSGNVPTDDAGDEALTFVIQEHHARRLHWDFRLEHDGVLASWAVPKGPPLSS
DEHRLAVQVEDHPLDYGSFEGVIPKGQYGGGTVTIWDAGTIEVEKWRSDEIIVVLHGRKT
GGLGGLPRRYVLVRTSGGGEKAQWLLIFKKDQPAAAQSRVGKGEDGSDRHMGQRGSGHKA
DDSPPDSAHGDGLREGDDKSKKSEPDDAKVVSDLGKEPELELPDEAPAPMLATLGSPDDL
DDGQDWALEMKWDGVRAICLVAGNRVRLVSRNGNDVTERYPELAELASALNADAAILDGE
IVALDQDGRPDFELLQPRMHLDGRRAARLARENPVTLMLFDVLSLTVEGSERRLMRTGYR
QRRELLEAAVEPTERIRVPSQFDGSLPKALEHAKAERLEGVMAKRQDSVYVPGRRSRQWI
KIKHRRDQSAVIVGWRVDAEDRLRSLLLAVPDDDGTLHYAGRVGSGISPNQIHDLEQKLQ
PIERKTPPLGDVPAADRHDARWVRPSLVGEVAYAEVTHEGKLRSPVWRGWRDDVIPDDVR
WEKTR
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaagcgacaaacgatcgaagtcggaggcttgaagctcgcggtatccaacctt
gacaaggtgatgtacccagaaaccggcaccaccaagggtgacgtgctcgactactacctg
cagatcgcgccggtgctggtgccgcaggcggcctggcgtccggcgacccgtaaacggtgg
gtgaacggcgtcggcaccgcagacgatccgggcgaggtcttcttccgcaaagacttggaa
gatggtacgcccggctgggttccgaccggaaagatcgtccacaaagagcggacgaatgtg
tatccgctggccaataacgccgcggtgctcgcctggttcgcccagctggccgcactcgag
gtccacgtgccgcaatggcggttcggctccgatggagcaccccgtaatccggatagattg
gtcctggatctcgaccccggcgagggcgccgggctgaaggagtgcgtcgccgtagcacat
atgatccgcgacattctgaccgatatgaagctggacgcggtgccggtgacatcgggttcg
aagggcattcatttgtatgccccgctcgacggccggacgaccagcgatcaggtcgccgcg
gtggccaagcagctcgccgagtcactggaaaaggaagcgcccaagcaggtcatcgcaatc
cagaagcgggccgagcgcgcgggcaaggtgctggtcgactggtcgcagaacaatgcggcg
aagacgacggtctgtccgtattcactgcgcggacgcatgcgtccgaccgttgcctgcccc
agaacctgggacgaactcgatgacccgaagctcgcccagttggactatcgcgaggtgctg
aaacgggtcgccgatggcctcgacccgattgccgaccagggctggccctttgatcaggca
cccgaggcgcccaagaagtcgcgctccgcggattcggggacgaccgacaagttgacccgc
tatcgcgagaagcgcgatgccaatctgacgcccgaaccggtgccggaggcctcgggcaag
agcacgggcggcaagagcaaagccagggaaacccacaagcaaggtacatccagcacctct
aagcaagaggattccgccgactcctcctccggcaacgtcccgaccgacgacgcaggcgac
gaggcgttgaccttcgtcattcaggagcaccatgcccgccggctgcactgggatttccgg
ctcgaacacgatggcgtccttgcgtcgtgggcggtgccgaagggccctccattgtcgagc
gacgagcaccggctcgccgtgcaggtcgaggatcacccgcttgactacggcagtttcgag
ggcgtgattccgaaaggccagtacggcggcggcacggtcacgatctgggacgccggcacc
atcgaggtcgagaaatggcgttccgatgagatcatcgtggtcctgcatggacgcaaaaca
ggtgggctcggtggtctcccccgtcgctacgtgctggtgcgcaccagcggcgggggcgag
aaggcgcagtggttgctgatattcaagaaggatcagccagctgccgcccaatcgagggtc
ggcaagggagaagacgggtctgatcggcacatgggtcagcgtggctctggacacaaagcg
gatgattcaccgccggactccgcgcatggcgacggcttgcgcgagggtgacgacaaaagc
aagaagagcgaacccgacgacgcaaaagtcgtatcggatttgggtaaagagcccgagctc
gaactccccgatgaggccccggccccaatgcttgccactcttggttcgccggacgacttg
gacgacggccaagactgggcgctggagatgaagtgggacggcgtacgcgcgatctgcctg
gtcgcgggcaaccgcgtccgcttggtttcgcgcaatggcaacgacgtcaccgagcgctat
cccgagctcgccgagttggcatcagcgttgaacgccgacgctgcgattctggacggcgag
atcgtcgctctggaccaggacggtcgtccggacttcgagttgctgcagccccgcatgcac
ttggacggacggcgtgcagcccgcttggcccgcgagaatcccgtgactctgatgctcttt
gacgttctttcgctgaccgtcgaaggatcggagcggcggctgatgcgcaccggctaccgc
caacgtcgcgaactgcttgaagccgcggttgaaccgaccgagcgaatccgggtgccgtcg
cagttcgatggctcgttgcccaaggccttggagcatgcaaaggccgagcggttggaaggc
gtgatggccaaacggcaggactcggtctacgtacccggacgcaggtcgcggcagtggatc
aagatcaagcatcgtcgcgaccagtcagcggtcatcgtcggctggcgggtggacgccgaa
gaccggctccgctcgctcctgcttgccgtgcccgacgacgatgggacgctgcactatgcc
ggacgcgtcggctctggcatctcccctaatcagatacatgatcttgagcagaagctgcaa
cctatcgagcggaagactcctccgttgggcgacgtgccggccgcagatcggcatgacgct
cgttgggtgaggccgagcctggtgggcgaggtcgcctacgccgaggtcacccatgaaggc
aaactgagatcaccggtgtggcgcggttggcgtgacgatgtcatcccggacgatgtccgc
tgggagaaaacccggtga
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