Propionimicrobium sp. PCR01-08-3: QQ658_03950
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Entry
QQ658_03950 CDS
T09133
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prop
Propionimicrobium sp. PCR01-08-3
Pathway
prop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ658_03950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prop03019
]
QQ658_03950
03009 Ribosome biogenesis [BR:
prop03009
]
QQ658_03950
Enzymes [BR:
prop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QQ658_03950
Messenger RNA biogenesis [BR:
prop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QQ658_03950
Ribosome biogenesis [BR:
prop03009
]
Prokaryotic type
rRNA processing factors
QQ658_03950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WIY83518
LinkDB
All DBs
Position
841228..844653
Genome browser
AA seq
1141 aa
AA seq
DB search
MLEDNSRDNEIWNPADQAPDSASQTPVPETQPPESRPQTPASDQQSAGTGNQASANAPAA
PADDLPRPPSGRRSKTRPAGPPQIAASKKTDPKALASKGSEPKAIESVTTAPTGRETESG
VALPATSNSPAGIDMPVFSHAEQNRAATAAADTEKQDKPAQKRASAKKKTNPDKPARTRS
RRSASASSADTSDASSAADTTDADAAAEQPQGEIPGLNRESVSSTADDAKTAGSPEPSSE
ATKEPKGAAPKPSRRRTSRKQTGTSQDGEGLDVSDIEAALAAAETATSRRSRSEKAADGD
VDRAQALASLAAAIAGQPEDDDLREKAVEQAAKQTDSKAGKANRHDTVVEAAEDEAEDAV
AGLVEGESAPGDAGHPEKPGTSSETTVTVEVTEKTEVSVEETENTDDEQGTSGRRRRRRG
GRRRRKSSGSDDESGENTEDEQGDHDESKHAEHGESSTKSDEDKHRDESGEGSGSSNRRR
RRRRRHSDDSADGDVAVRVREPKRASDEVAGIEGSTRLEAKKQRRREGRAAGRHRAPILT
EAEFLARRESVERVMMVRQREDYTQLAVLEDNVLVEHYVDRRSSTSLIGNIYLGRVQNVL
PSMEAVFIDIGRGRNAVLYAGEVDWNAYDVNSDRRKVEQVFKSGQTVLVQVSKDPVGAKG
ARLTGHVSIPGRYVVYSPGGHLSGISRKLPDSERHRLKKILDRVVGEESSVIVRTAAEGA
SEEELTADVERLKAQWEAIEKKAKQNTAPHQLYAEPDLTLRIIRDTFTEDFKHLFVAGNG
GDNDVYESIKEYLDHVAPHLAERLVKWDDSQGDPFAKFRIDEQISKALERKVFLPSGGSL
VIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVVDFIDM
VLPSNRELLLRRLVECLGRDRTRHQVSEVTSLGLVQMTRKRIGTGLAEAFTDECEQCGGR
GYIRHDEPVDSQAPADGGERHGGKGSGNSNRRRSNNNKSKAAKQDEATQPKANQVQPSEE
AKQAAARLAAAASRHHNGDQAAADEQAVDQLEGVDSASGHLDGEQPAEGKKPAADSVPTI
AETDDQAATEPERRDGTGGASTGSEPTARQGELLPGKAAAQLEAARSETGEQVDANQAPT
V
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagataattcgcgtgacaacgaaatttggaaccccgctgaccaagcccccgat
tctgcttcacagactccggttcccgaaacgcagccccccgaatcaaggccccagaccccg
gcgtccgatcagcaatccgccggcacaggcaatcaagcgagtgcaaatgcacccgcggcg
ccggccgacgacctgccgcgtccccccagcggacggcgctcgaagacccgccctgccggc
ccaccacagatcgccgcctccaagaagaccgaccccaaggcgctcgcgtccaagggcagt
gaacccaaggcaatcgaatccgtgacgacagctccaacgggtcgcgagaccgagtcgggg
gtggctctcccggccacctcgaattcaccggccggaatcgacatgccggtcttttctcat
gccgaacagaatcgggctgcgaccgcggcggccgataccgagaagcaagacaagcccgcg
cagaagagagcgtcggcgaagaagaaaacaaaccctgacaagccggctcgcacgcgttcg
cgtcgatccgcctcggccagttcggcagacacgtcggacgcgtcctcggcagccgacacc
actgacgccgatgcggcagccgaacagccccagggagagatcccgggcctgaaccgcgaa
tccgtctcctcgacggccgacgacgccaaaactgctggttcgcccgaaccgtcgtccgag
gcaacgaaagagcccaagggtgccgctcccaagccatcgcgtcgccgcacctcacgcaag
cagacgggaacctcacaagacggtgaggggctggatgtctccgacatcgaggccgcgctg
gccgcggccgagacggcgacctccaggcggagccggtcggagaaggccgccgacggcgac
gtcgacagggcgcaggcattggcatcactggcggcagcgatcgcgggccagcccgaagat
gacgatttgcgtgagaaggcggtggaacaagccgcgaagcagaccgattcgaaggcgggc
aaggccaaccggcacgacacggtagtcgaagccgccgaagacgaggccgaggatgcggtg
gctgggctcgtcgagggagagtccgctcctggcgatgccggccacccggagaagccgggc
acatccagcgagacgaccgtaaccgtcgaagtgaccgagaagaccgaggtgtcggtcgag
gaaaccgagaatacggacgacgagcagggcacctcgggccgccgtcgccgccgtcgaggc
ggacgtcgtcgccgcaagtcgtccggttccgatgacgagtcgggcgagaacaccgaggac
gagcagggcgaccatgacgagtcgaagcatgccgagcatggcgaatcgtccaccaagtcg
gatgaggacaaacaccgcgacgagtccggcgaaggtagcggatcgtccaaccgcaggcgc
cgtcggcgccgccgtcactcggacgattcggctgacggagatgtcgcggtgcgcgttcgc
gaacccaaacgggccagcgacgaagttgccggcattgagggctcgacccggctggaggcg
aagaagcagcgccgccgtgaaggcagggcagccggacgccatcgcgcgcccattctgacc
gaggccgagttcctggcccgccgtgaatcggtggagcgggtcatgatggtccgccagcgc
gaggactacacccagctcgcggtgctggaagacaacgtgctggtcgagcactatgtcgac
cgtcgttcgtccacctcgttgatcggcaatatctacctgggccgagtgcagaacgtgctg
cccagcatggaggccgtcttcatcgacatcggacgcggccgcaacgcggtgctgtacgcg
ggcgaggtcgactggaacgcctacgacgtgaactccgatcgccgcaaggtcgagcaggtt
ttcaagtcgggccaaaccgtgctcgttcaggtgagcaaggatccggtgggtgccaagggg
gccaggctgaccggtcacgtttcgattcccggacgctacgtcgtctattcgccgggcgga
cacctttcgggcatcagccgcaagctgcccgattctgagcggcatcgcctgaagaagatc
ctcgaccgggttgtcggcgaagagtcgtcggtgatcgtgcgtaccgccgccgagggtgcg
agcgaagaagagctgaccgcagatgtcgagcgcttgaaggcgcagtgggaagcgatcgag
aagaaggcaaaacagaacacggccccgcatcagctgtatgccgagcccgacctgacgctg
cggatcatccgcgacaccttcaccgaagacttcaagcatctgttcgtggccggcaacggc
ggcgacaacgacgtctacgagtcgatcaaggagtacctcgaccacgtcgccccgcatctg
gccgaacggctggtcaagtgggacgactcacaaggtgatcccttcgccaagttccgcatc
gacgagcagatcagcaaggccctggagcgcaaggtcttcctgccgagcggcggttccctg
gtgatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggaaaattcaccggc
tccggcggcaatctcgaagagaccgtcacccgcaacaacctggaagccgccgaggagatc
gttcggcagctgaggctgcgcgatctcggtggcatcatcgtggtcgacttcatcgacatg
gtgctgccgagcaaccgcgaactgttgttgcgcaggctggtcgagtgtctcggcagggac
cgtacccgtcaccaggtcagcgaggtcaccagcctcggcctggtgcagatgacccgtaag
cgtatcggcaccggactggcagaagccttcaccgatgagtgcgagcagtgtggtggacgc
ggatacatccgccacgacgagcccgtcgactcgcaggcccctgccgacggcggagagcga
catggcggcaagggttcgggaaacagcaaccgccggcgttcgaacaacaacaagtcgaag
gccgccaagcaggacgaggccactcagccgaaggccaaccaggtacaaccgtcggaggaa
gccaagcaggctgccgccaggctggccgctgctgcgtccaggcatcacaacggtgaccag
gccgccgcagacgagcaagccgttgatcagctggagggtgtggattctgcatccggccat
cttgatggtgaacagccggcggaaggcaagaagccggccgctgactcggtgccgacgatt
gctgaaacggacgatcaggcagctacagagcctgagcgccgcgacggcaccggcggcgct
tcgaccggatcggagccgacagcgcgacaaggcgaattgctgcctggtaaggctgccgcc
cagctggaggccgcgcgctcagaaaccggcgagcaagtcgatgccaaccaggcgccgacg
gtttga
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