Propionimicrobium sp. PCR01-08-3: QQ658_08435
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Entry
QQ658_08435 CDS
T09133
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
prop
Propionimicrobium sp. PCR01-08-3
Pathway
prop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ658_08435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prop03019
]
QQ658_08435
Messenger RNA biogenesis [BR:
prop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QQ658_08435
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WIY81565
LinkDB
All DBs
Position
complement(1835979..1837667)
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AA seq
562 aa
AA seq
DB search
MSALQMPPRLAPDTLRIIPLGGLGDIGRNMTAFEINGKVLVVDCGVLFPEDDQPGVDLIL
PGLDYLDDRMDDIVGLVLTHGHEDHIGGVPYLLRRRQDIPLYGSKLTLAFVDGKLREHRL
RDTAMYHTVVEGETVQLDEFELEFFAVNHSIPDALAVAIKTTAGIVLHTGDFKMDQIPLD
HRITDLRGFARLSNDERGVDLLMADSTNADVAGFTLPEKDIEPALERVFNQATQKLVVAC
FASHVHRVQQILNLAVRHGRKVVYVGRSMVRNMGTAQELGYLKVPGGTLIELNDIERYPD
EKVVIISTGSQGEPLSALARMANREHPIVQVGQGDTVLLASSLIPGNENSVYRVINGLTR
LGVTVVHKGNALVHTSGHASAGELLYTYNVVRPRNALPVHGEARHLVANAKLAQQTGIPA
DHTIVAEDGDVIDLAKGVAKRTGRVDASYIFVDGTTVGDVTETSLTDRRILGEEGFISVI
VAVDLRSQTIVAGPDISARGFLEDASIFDSVTEEIRRALEQGLADGVDDPHRLQQSVRRV
IGRWVSRTYRSRPMIVPVVIAV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctcttcagatgccgcccaggcttgcccccgacacgttacgaatcatccccctc
ggcgggctcggtgatatcggccgcaacatgaccgccttcgagatcaacggcaaggtgctg
gtggtcgactgtggcgtcctgttccccgaggacgaccagccgggcgtcgatctgatcctg
cccggcctggattatctggacgaccggatggacgacatcgtcgggctcgtgctgactcat
ggccatgaggaccacatcggcggcgtgccgtatctgttgcgccgccgccaggacatcccg
ctgtacggcagcaagttgacgctggcgtttgtcgacggcaagctgcgcgagcatcggctg
cgcgacaccgcgatgtatcacacggttgtcgaaggcgagaccgtgcagctggacgaattc
gagctggagttcttcgccgtcaaccactccattccggacgcgttagcggtcgcgatcaag
accaccgcgggcatcgtgctgcacaccggtgacttcaagatggatcagattccgttggat
caccggatcaccgacctgcgtggattcgcccggttgtcgaacgatgagcgcggcgtcgat
ctgctgatggccgattcgacgaacgcggacgtcgcaggcttcacgcttcccgaaaaagac
atcgagcctgccctcgaacgggtcttcaaccaggccacccagaaacttgtggtggcatgc
ttcgcctcgcacgtgcaccgggtgcagcagattctcaatctcgccgtgcggcatggccgc
aaggtcgtttatgtcggacgctcaatggtgcgcaatatgggcaccgcgcaggaactcggg
tacctcaaggtgcccggcggtaccttgatcgagttgaacgacatcgagcgctatccggac
gaaaaggttgtgatcatctcgaccggttcgcaaggcgagccgctgtccgcgctggcccgg
atggccaaccgtgagcaccccatcgtccaggtcggtcagggtgacaccgtgctgctggcg
tcctcgctgattccgggcaacgagaattcggtttaccgcgtgatcaacggactgaccagg
ctcggggtcacggtcgtgcacaaggggaacgcgctcgtgcacacctcggggcacgccagt
gcgggggagttgctctacacctacaacgtggtcaggccgcgcaacgcgctgccggttcac
ggcgaggccaggcatctcgtggcgaacgcgaagctcgcccagcagaccggaatcccggcc
gaccacacgatcgtggccgaagacggcgatgtcatcgatctggcgaagggcgtggccaag
cgcaccggacgagtggacgcgtcctatatctttgtcgacggcacgaccgtcggcgacgtc
accgagacctcgctcaccgatcgtcggattttgggcgaagaaggcttcatctcggtgatt
gtggccgtcgacctgcgttcccagaccatcgtcgccgggcccgatatcagcgcgcggggc
ttcttggaggacgcatcgatcttcgactcggtcaccgaggagatcagacgtgccctggag
caggggctggccgatggggtcgacgacccgcaccgattgcagcaaagcgttcgccgtgtg
atcggacgctgggtctcgcgcacctaccgcagccgtcccatgatcgttcccgtggtcatc
gccgtctga
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