Prosthecochloris sp. GSB1: CHL67_03170
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Entry
CHL67_03170 CDS
T04996
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pros
Prosthecochloris sp. GSB1
Pathway
pros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHL67_03170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pros03019
]
CHL67_03170
03009 Ribosome biogenesis [BR:
pros03009
]
CHL67_03170
Enzymes [BR:
pros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHL67_03170
Messenger RNA biogenesis [BR:
pros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHL67_03170
Ribosome biogenesis [BR:
pros03009
]
Prokaryotic type
rRNA helicases
CHL67_03170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ASQ90057
LinkDB
All DBs
Position
667958..669727
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AA seq
589 aa
AA seq
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MITKSAVPASFRDLGLSEAVLSALDSVGYEIPTPIQNQTIPVMLAGGDILGLAQTGTGKT
AAFALPLLSRIDLSRSEPQVLVLTPTRELAIQVAEAFQRYASFLDDFHVLPIYGGQDYGG
QLRRLKRGVHVVVGTPGRVIDHIKRKTLNLEGIRCLVLDEADEMLRMGFVEDVEWILDQT
PHSRQVALFSATMPGAIRAISRKYMRECTEIAVKAKSSTVETISQRFLMVSGHHKLDALT
RILELEQFDGVIVFVRTKTSTLELSEKLRARGYAATALNGDMVQNHREKTVGQFKDGVWN
ILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGEAILFVAPREMSML
RAIERSIRKGIERMELPSAEVINDKRIANFKKQISDTLSTADLGFFEDLVSAYCHEHDVM
PIHAAAALASLYQGDSPLLLSPKPEREVKKAKARDGFEEKGGKRQQGRSREDRFQEAIRF
DRYRVEVGKEHGVKPANIVGAIINEIGLDNGAVGRVSIFNEYSTVELPEGMPRDVFGELK
KIRVCGQQLRASRLDGRFDEFETLVPRKKRKTKKSAVRTARSKRKGKGR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgataacgaaaagtgccgtgcccgcctcgtttcgcgacctgggcctttcggaggccgtt
ctcagtgccctcgattccgtgggatacgagattcccacgcctatccagaaccagaccatt
ccggtcatgctcgccggcggcgatattctaggcctcgcccagacggggacgggaaagacc
gcggcgttcgcgctgccgctgctttccagaatcgatctctcccgttctgaaccacaggtc
ctggtgctgacgcccacgagggaacttgctatccaggtcgccgaggcgtttcagcgctat
gcctcttttctcgacgacttccatgtcctgccgatatacggcgggcaggattacggcggc
cagcttcgccgcctgaaacgcggtgtgcacgtcgtcgtcggaacccccggcagggtgatc
gaccacatcaagcgcaagacgctcaatctcgaaggcatcaggtgtctcgtgctggacgaa
gccgacgagatgctgcgcatggggtttgtcgaggacgtcgagtggattctggaccagact
ccccattcgaggcaggtcgcgcttttttcggcgacgatgccgggggcgatcagggccatc
tcccgcaagtacatgcgcgaatgcaccgagatagccgtcaaggcaaagagttcgacggtc
gaaaccatctcgcagcgttttctcatggtctccgggcatcacaaactcgacgccctgacg
cgcattctcgaactggagcagttcgacggggtcatcgtcttcgttcgcaccaagacctcc
acgctcgaactttcggaaaaactcagggcgagagggtatgccgccactgcgctgaacgga
gacatggtccagaatcaccgtgaaaaaacggtcggccagttcaaggacggggtctggaac
attctcgtggctacagacgtggccgcccggggactcgacgtcgagcgaatcagccatgtc
gtcaactacgatattcctaccgatactgaaagctacgtgcatcgtatcggcaggacaggc
agggccgggcggtccggcgaggcgattcttttcgtcgccccgagggaaatgtctatgctg
cgggcgatcgaacgctcgatacgcaagggcatagaacggatggagctgccttcagccgag
gtcatcaacgataaacgtatcgcgaatttcaagaagcagatcagcgacacgctttcgacc
gcggacctcggtttcttcgaagatctcgtttcggcctactgtcacgagcatgacgtgatg
cccattcatgccgctgctgcgttggcgagcctctatcagggcgacagtcccctgttgctt
tcaccgaagcccgagagagaagtgaagaaagcgaaagcgcgggacggcttcgaagagaaa
ggcggaaagcgccagcaaggcaggtcgagagaagaccggttccaggaagccatccgcttc
gatcgctatcgtgtcgaggtcggcaaggaacacggcgtcaagcccgccaatatcgtcggt
gcgattatcaacgagattggcctggacaacggagccgtcggccgggtttcgattttcaac
gagtacagtacggtcgaactgcccgaagggatgcccagagacgtgttcggcgagttgaag
aagatcagggtctgcggccagcagctcagggcatcgcgcctcgatggccggttcgacgaa
ttcgagacgcttgttccccgaaaaaaacggaaaacgaagaagagcgcggttcgcacggcg
cggtcgaaaagaaagggaaaaggacggtaa
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