Prosthecochloris sp. GSB1: CHL67_03500
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Entry
CHL67_03500 CDS
T04996
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pros
Prosthecochloris sp. GSB1
Pathway
pros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHL67_03500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pros03019
]
CHL67_03500
Enzymes [BR:
pros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHL67_03500
Messenger RNA biogenesis [BR:
pros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHL67_03500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
EB1
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASQ90115
LinkDB
All DBs
Position
738997..740253
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AA seq
418 aa
AA seq
DB search
MGFTTLDLIDPIARALREEGYAMPTPIQAEAIPHILQGSDLLGCAQTGTGKTAAFAIPVL
QLLDKRKTFEKKRRIRALVVTPTRELAIQIGDSFTAYGRHTGLTNLVIFGGVGQTPQTNA
LRNGVDILVATPGRLLDLMGQGYLTLKDIEILVLDEADRMLDMGFIHDIRKILKALPEKK
QSLFFSATMPPEIVRLAGTILKNPAKVTVTPVSSTVDTISQQVYFVDKGNKKHLLVHLLK
DAAIESVLVFTRTKHGADKVVRFLQKHRIRAEAIHGNKGQNARQRALGNFRDRSTRVLVA
TDIAARGIDVDDLEYVINYDMSNVPETYVHRIGRTGRAGAKGTAISFCDAEEKAWLRDVE
KLISKKIPEVDHHPYPLTDDIPVPAPVRQGRGGEGRSAQGRPSAKSNVKRWGATRKAR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgggattcactacgttagatcttatcgatccgatcgcacgcgcattgcgtgaggaagga
tacgcaatgccgacgccgatacaggcggaggccattccgcacatcctgcagggcagcgac
ctgctcggatgcgcgcagaccggtacgggcaagacggcggcgttcgccattcccgtgctg
caactgctcgacaagcggaagaccttcgaaaagaaacgcaggatcagggcgctcgtcgtg
acgccgacgcgcgagctcgccatccagatcggcgacagcttcacggcctacggccgccat
acggggctcacgaacctcgtgatcttcggcggcgtcggccagacgccgcagaccaacgcg
ctgcgcaacggcgtcgacattctcgtcgccacgccgggccgtctgctcgacctgatgggc
caggggtatctgaccctgaaggatatcgagatactggtgctcgacgaggcggaccgcatg
ctcgacatgggctttatccacgatatccgcaagatcctcaaagcgctgcccgaaaagaag
cagtcgctttttttctcggctaccatgccgcccgaaatcgtgcggctcgcaggcaccatc
ctgaagaaccccgcgaaagtgaccgttacgcccgtctcctcgaccgtggacacgatcagc
cagcaggtttacttcgtcgacaaggggaacaagaaacacctgctcgtgcatctgctgaag
gatgcggcgatcgagtccgtgctcgtcttcacgcgcaccaagcacggggcggacaaggtg
gtgcgcttcctgcagaagcatcgtatccgcgcagaggcgatccacggcaacaagggccag
aacgcccggcagcgggcgctcgggaacttccgggaccgctccacgagggtgctcgtggct
acggatatcgccgcgcgcggcatcgacgtggacgacctggagtacgtgatcaactacgat
atgtcgaacgtgcccgagacctacgtccaccgcatcggccggactggccgggcgggagcg
aagggcacggccatctccttctgcgacgcggaggaaaaggcctggctgcgcgacgtggag
aaactgatctcgaaaaaaatcccggaagtcgatcatcatccctatcctctgacggatgac
attcctgtgcccgcacccgtgcggcaggggaggggcggcgaagggcgttccgcccagggg
cggccatcggcgaaatcgaacgtgaaacggtggggcgcaacgagaaaggcgcggtga
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