Proteus sp. CD3: BTA34_05405
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Entry
BTA34_05405 CDS
T06244
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prot
Proteus sp. CD3
Pathway
prot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTA34_05405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prot03019
]
BTA34_05405
03009 Ribosome biogenesis [BR:
prot03009
]
BTA34_05405
Enzymes [BR:
prot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BTA34_05405
Messenger RNA biogenesis [BR:
prot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTA34_05405
Ribosome biogenesis [BR:
prot03009
]
Prokaryotic type
rRNA processing factors
BTA34_05405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
QEZ91813
LinkDB
All DBs
Position
complement(1217883..1221350)
Genome browser
AA seq
1155 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAEAL
QQDLSYRLRHWDAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMA
RSHIEAIGRGDFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRMREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQSNVKVVIVPNDQMQ
TPHFSVIRVRKGEEITSLSYNLAQFHESQLNEAEDDVVTERKAPEQPAISAFGLQEEEPI
EATKSKKAPQPQAKPVKSEQAQGTGFFASIAKFFSNLFSSQPEPVVTPEKPQENKKENND
NRRDRRNNNNRRNNNNRRDRDNDRNRDNANSEDNRKNRNQKPQTTPTTEVSSEQEIAERE
ARRQQRREQRAEQRRRQEEKRQQQQEAAKAQAALAENDTVAKGNADEKKEEPRRPAMQRR
NRRQLTQSVRVTDNDNTLAVIPVVTEKAVSEPPVATTQTKVAPTEKPAPKAVAVAKVEAN
EAQAVKALPDATKPQDDNKNEDNNGQDNVMPRRSRRSPRHLRVSGQRRRRYRDERTLTVS
PMPLAMAVASPELASGKVFIRYPITPVSDAAFVENNVENNNDVSVENHIITHQDPQMVAI
APAVSEAIVADIAQEGSTESTYSVTVSTESTTEAVAEIIAVEPPKAEPVETNNIIGSNVI
NDVINEVNTEEHVTRKENISAVLNTTEAYMHETSPQVETSITPEEVAQDTVAPVESETST
PEQPQPVEAVIATEETVEQHKEVAVETVVAPATKAETVIENQPEASAIPAVDVETVTESK
PAEVVIRQEPVAVARQLHASSPMTKAPAANEAPVAIEIKAWEARPAFDKKGRSGAGGHCS
TNHASSGMTKAESQN
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgcccttgtcgat
gggcaacgtttgtacgatctggatatcgaaagccccggtcatgaacagaaaaaagcgaat
atctataaaggtaaaattactcgaattgaacccagcttagaagccgcttttgttgattat
ggtgcggaacgccacggtttccttcctatcaaagaaattgcccgcgaatactttcctagt
aattatcactcccatggtcgtcctaacatcaaagatgtcttaaaagaaggtcaggaagtt
attgttcaagttgataaagaagagcgtggtaataaaggtgcagcattaaccacttttatc
agccttgcgggaagttatttggtattaatgccaaataatcctcgtgcaggtggtatttct
cgccgtattgaaggtgaagaccgtactgaactcaaagaagctttatcaagccttgaaatc
ccagatggtatgggtctgattgtacgtacagcaggtgttggtaaatctgccgaagcgcta
caacaagacttaagctatcgtttaagacactgggatgcaattaagaaagcggctgagaat
cgccctgcgccattcttaatccatcaggaaagtaacgtaatcgttcgcgcattccgcgac
tacttacgtcctgatattggcgaaattttaattgataacgcaaaagtcgttgaaatggca
cgtagccatattgaagcgattggtcgtggtgattttgctagcaaaattcgccattacact
ggtgcagtacctctgtttagccattaccagattgaatcacagattgaatctgcttttcag
cgtgaagttcgccttccttctggtggcgctttagttattgatacaactgaagcattaaca
gcaattgatatcaactcctcacgctcaacccgtggtggtgatatcgaagaaactgccttt
aatactaacttagaagcggctgacgaaattgcacgtcaattacgtttacgcgacttgggt
ggtttaattgttatcgactttatcgacatgacgcctgtacgtcatcagcgtgaagttgaa
aacagaatgcgcgaagctgttcgccaagatcgcgctcgcattcaaattggacgcatctct
cgctttggcttattagagatgtctcgtcagcgtttaagcccttcattaggtgaatctagc
catcacgtttgtccgcgttgtttaggcaccggtactattcgtgataacgaatcactgtca
ctttctgtgttacgtcttattgaagaagaagctcttaaagaaaatacacatgaagtacac
gcaattgtgcctgttcaaatcgcctcttatttgcttaacgaaaaacgtaaagcagtaaca
gacattgaattacgtcaatctaatgtcaaagtggttattgttcctaatgaccaaatgcaa
acgcctcatttctctgttattcgtgtacgtaaaggcgaagaaattacctctctgagctac
aacttagcgcaattccatgagagtcagttaaatgaagctgaggacgatgttgttacagag
cgtaaagcacctgaacaacctgctatttcagcctttggattgcaagaagaagagccgatt
gaagcaacgaaaagcaaaaaagcacctcaacctcaagctaaacctgttaaatcagaacaa
gctcaaggtacaggtttctttgcctctatcgcaaaattcttctctaacttatttagtagt
caaccagagcctgtggtaacaccagaaaaaccacaggaaaataagaaagagaataacgat
aatcgtcgtgatcgtcgtaataacaataatcgacgtaacaacaataatcgccgtgaccgt
gataacgatcgtaatcgtgataacgcaaatagcgaagacaatcgcaaaaatcgcaatcaa
aaaccacaaacaacgccaacgactgaagttagtagtgagcaagagattgcagagcgcgaa
gctcgtcgccagcagcgtcgtgaacaacgtgcggaacagcgtcgtcgtcaagaagaaaaa
cgtcaacaacaacaagaagcggctaaagcacaagcggctcttgctgaaaatgataccgtt
gcaaaaggtaatgctgatgagaagaaagaagaacctcgtcgccctgctatgcaacgccgt
aatcgtcgtcaattaacacaatctgtacgcgtgactgacaatgataatacattagctgtt
atacctgttgtgactgaaaaagccgtttctgagccgcctgttgcaacaacacaaactaaa
gttgcgccgacagaaaaaccagcgcctaaagcagttgctgttgcgaaagttgaagcaaat
gaagcacaagctgtaaaagcgttaccagatgcaactaaaccacaagatgacaataaaaac
gaagataataacgggcaagataatgttatgccacgtcgttctcgccgttcgcctcgtcat
ttacgtgtaagtggccaacgtcgtcgtcgctatcgtgatgagcgtaccttaacagtatca
ccaatgcctctggcaatggcggtggcttctcctgagcttgcttcaggtaaagtcttcatt
cgctacccaatcacaccagtaagtgatgcagcatttgttgaaaataatgttgaaaataac
aatgatgtttctgttgaaaaccacattattactcatcaagatccacaaatggtcgcgatc
gcacccgcggtttcagaagccattgttgctgatattgcacaggaaggatctacagaatcg
acttactctgtcacggttagcactgaatcaaccacagaggctgttgctgaaattattgca
gtagagccgccaaaagcagagcctgttgaaacgaataacatcattggaagcaacgttatc
aatgatgtaattaatgaagtgaatacagaagagcacgttactcgtaaagagaatatttca
gcggtattaaataccactgaagcttatatgcatgaaacttcaccacaagttgaaacaagt
atcacgccagaagaagttgcacaagatacagttgcaccagtagaaagtgaaacttcaaca
cctgaacaacctcagcctgttgaagcagtaatagcaactgaagaaactgttgaacaacac
aaagaagttgctgttgaaactgttgttgcccctgccactaaagctgaaactgttattgaa
aatcagccagaagcaagtgcaatcccagctgtggatgttgaaacagtaaccgagagcaaa
ccagctgaagttgttattcgccaagagcctgttgcagttgcacgccaactacatgcaagc
tctccaatgacaaaagcaccagctgctaatgaagctcctgtggcaattgaaatcaaagcc
tgggaagcacgtccagcttttgataagaaaggtcgcagtggtgcaggtggacattgttct
actaatcacgcttcttcaggaatgactaaagctgaaagtcaaaactga
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