Proteus sp. CD3: BTA34_18110
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Entry
BTA34_18110 CDS
T06244
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
prot
Proteus sp. CD3
Pathway
prot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTA34_18110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prot03019
]
BTA34_18110
03016 Transfer RNA biogenesis [BR:
prot03016
]
BTA34_18110
Enzymes [BR:
prot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BTA34_18110
Messenger RNA biogenesis [BR:
prot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTA34_18110
Transfer RNA biogenesis [BR:
prot03016
]
Prokaryotic type
tRNA degradation factors
BTA34_18110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QEZ94133
LinkDB
All DBs
Position
4033273..4035765
Genome browser
AA seq
830 aa
AA seq
DB search
MSKDPFQDREAEKYASPIASREYILEEMKKRTAPMSREDLAQALKISGEEDLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLWKGKVIGHRDGYGFLRAEGQKDDLYLSQDEMKKTMH
GDVILAQPLGMDRKGRREGRVVRVIEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
EDIMGARMGNVVVVEITTRPTRRTQAVGRIVEILGETMGTGIAVEIALRTHEIPHTWPEK
VTKEVADLKEEVPESAKQGRVDLRNLPLITIDGEDARDFDDAVYCQRKKGGGWRLWVAIA
DVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
EQGRLSSYKFYEAVMSSHARMTYTKVWKIIQGDEELREHYKPIVQDIEHLYELYQVLDKA
REQRGAIGFESEEAKFIFNAERRIERIEPVVRNDAHKLIEECMILANIAAARFVEKNEEP
ALYRIHDKPKEESVLNLRSVFNELGLTLPGGLTPEPADYARVMKEVEDRPDREMLQTMIL
RSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLALHRAIKYQIAKQEGHGSQRWTPT
GGYHSDMDTMLQLGEHCSLTERRADEATRDVADWLKCDFMLDQIGQQFTGIITSVTGFGF
FVRLNDLFIDGLVHVSTLNNDYYQYDNVGQRLIGESSGQVYRLGDEVEVKVEAVSMDERT
IDFSLISTTRTARNPGKTARVRGLKGEKDKKNASSSKSRRRDASKDKNFEPDSAFKKGKS
SGRGKASKDNAVKDQVAKDKASSKRKKASSQTKKIEAKLKAKRAAKRDNA
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggatagagaagcagagaaatacgcctctccaattgctagt
cgcgaatatattttagaagaaatgaaaaaacgcacggcacccatgagccgtgaagattta
gcacaggcgttaaaaatttctggtgaagaagacttagaagcgttacgtcgccgtttaaga
gcaatggaacgtgatggtcaattagtttttacccgtcgccagtgttacgcattaccagaa
cgccttgatttgtggaaaggtaaggtaatcggtcatcgcgatggttatggttttttacgt
gcagaaggtcaaaaagatgacctttatctttcacaagatgaaatgaaaaaaacgatgcat
ggcgatgtgatccttgctcaacctttaggtatggatagaaaaggtcgccgtgaaggtcgt
gttgttcgtgttattgaaccacgaaataaccaaattgtaggtcgctattttattgagtca
ggtatgggatttgttgtacctgatgatagccgtttaagctttgatattcttattcctaaa
gaagatatcatgggcgcacgaatgggaaatgtggttgtcgttgaaatcacaacaagacct
actcgtcgcactcaggcagtagggcgtatcgttgagatcctaggcgaaacgatgggaaca
ggtattgcagtggaaattgccctgcgtactcatgagatccctcatacatggcctgaaaaa
gtcaccaaagaagttgctgatttaaaagaagaagtgccagaatcagctaagcaaggacgt
gtcgatttacggaacttacctttaattaccattgatggtgaagatgcgcgagatttcgat
gacgccgtttattgtcaacgtaaaaaaggtggtggctggcgtttatgggtcgcaatcgcg
gatgtgagctattatgtgcgtccacaaacagcattagatacagaagcgcgtagccgagga
aactctgtttacttcccttctcaagtcgtgccgatgttgccagaagttctgtctaatgga
ttgtgttcattaaatccacaagttgaccgcttatgtatggtttgtgagatgacggtttct
gaacaaggacgcctttcttcttataaattctatgaagcggtgatgagttctcatgctcga
atgacctacaccaaagtgtggaaaatcattcaaggtgatgaagaactgcgtgaacactat
aaacctatcgttcaagatattgagcatctatacgaattgtatcaagtgctagataaagcg
cgtgagcaacgtggtgcgattggttttgagtcagaagaagcgaagtttatctttaatgca
gagcgtcgtattgagcgtattgagccagttgttcgtaatgatgcacataaattgattgaa
gagtgcatgatccttgctaatatcgcagccgctcgctttgttgagaaaaacgaagaacct
gcactttatcgtattcatgataaacccaaagaagagagcgttctgaatttacgttcagtc
tttaatgaattagggttaacgctgccaggaggcttaacgccagagccagcagattacgcg
cgtgtcatgaaagaagttgaagaccgtcctgatcgtgaaatgctgcaaaccatgatcttg
cgttccatgaaacaagcgatttacgatcctgaaaatcgtgggcactttggtttagcacta
aaatcttacgcgcactttacctcgccaattcgtcgttatccggacttagcgttgcatcgc
gctattaaatatcaaattgcgaaacaagaaggtcacggttcacagcgctggacaccaaca
ggtggctaccatagtgatatggacaccatgttgcaattaggtgagcactgctctttaaca
gagcgccgtgctgatgaagcaacacgagatgtcgctgattggctgaagtgtgactttatg
ctggatcaaattggtcaacaatttacaggtattatcactagcgtaacgggctttggtttc
tttgttcgcttaaatgatctgtttattgatggtctggtgcatgtttctacattaaataat
gattactatcagtatgataatgtaggacaacgcttaattggtgagtcttcaggacaagtt
tatcgccttggtgatgaagttgaagtgaaagtggaagcggtcagtatggatgaacgtact
atcgacttctctttaatttcaacaacacgcactgcacgtaatccgggtaaaacagcccgt
gttcgtggactaaaaggtgaaaaagacaagaaaaacgctagttctagcaagtctcgtcgt
cgtgatgcaagcaaagataaaaactttgagccagatagtgccttcaaaaaaggcaaatca
tcaggtcgaggtaaggcgagcaaagataacgctgtaaaagaccaagttgcgaaagataaa
gcaagtagcaaacgtaagaaagcatcatcacaaaccaaaaagatagaggcaaaacttaaa
gctaaacgcgcagccaaacgcgataacgcataa
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