Promicromonospora sp. Populi: AB1046_01145
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Entry
AB1046_01145 CDS
T10796
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
prou Promicromonospora sp. Populi
Pathway
prou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB1046_01145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prou03019
]
AB1046_01145
Messenger RNA biogenesis [BR:
prou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB1046_01145
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XDS65074
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Position
251062..252747
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AA seq
561 aa
AA seq
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MSHPHPELSLPPALPEGGLRVVALGGLGEVGRNMAVLEHAGKLLIIDCGVLFPEDNQPGV
DLILPDFDYIKDRLDDIEAVVLTHGHEDHIGAVPYLLRLRKDIPLVGSRLTLAFIEAKLK
EHRIKPYTLEVKEGQREKLGVFDCEFVAVNHSIPDALAVAVTTAAGTLLHTGDFKMDQLP
LDGRITDLRAFARLGEKGVDLFMVDSTNAEVPGFVTPEVEIGPVLDNVFAHADKRIIVAS
FSSHVHRVQQVLRAAHAHGRRVALVGRSMVRNMGIAAELGYLDVPPGVLIDLRKADSLPD
DQIVYMSTGSQGEPMAALSRMANGDHKVQVETGDTVILASSLIPGNENAVFRIINGLTRL
GARVVHGGNAKVHVSGHASAGELMYCYNILKPKNVMPVHGEVRHLVANGALAVRTGVPAD
RVVLAEDGVVVDLVDGKASVVGAVPCGYVYVDGSSVGEITDAELKDRVVLGQEGFVSVFA
VIDTATGKVLAPPQVLARGMAEDASVFDKVMPEVTAALESAIAGGATDTHQLQQIMRRTI
GRYVATRLRRKPMIVPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcatcctcaccctgaactatccctgccccccgcactgcctgaaggcggactgcgt
gtggtcgccctcggcggcctgggcgaggtgggacgcaacatggcggtcctggagcatgcc
ggaaagctgctcatcatcgactgcggagtcctcttcccggaggacaaccagcccggcgtg
gacctgatcctgccggacttcgactacatcaaggaccgcctcgacgacatcgaggcggta
gtgctgacgcacggccacgaggaccacatcggtgccgtgccgtatctgctgcggctccgc
aaggacatcccgctggtcggctcgcgcctgacgctcgccttcatcgaggcgaagctcaag
gagcaccgcatcaagccctacacccttgaggtgaaggaggggcagcgcgagaagctcggc
gtcttcgactgcgagttcgtcgcggtcaaccactccatcccggacgcgctcgccgtggcc
gtcaccaccgccgcaggcaccctgctgcacaccggtgacttcaagatggaccagctgccg
ctcgacggccgcatcaccgacctgcgcgccttcgcccgcctcggcgagaagggcgtcgac
ctcttcatggtcgactccaccaacgccgaggtgccgggcttcgtgacgcccgaggtcgag
atcggcccggtgctggacaacgtgttcgcgcacgcggacaagcggatcatcgtcgcgtcg
ttctcgtcgcacgtgcaccgcgtgcagcaggtgctgcgcgccgcgcacgcccacggccgg
cgcgtcgccctcgtgggccgctccatggtgcgcaacatgggcatcgccgccgagctcggc
tacctcgacgtgccgccgggcgtgctgatcgacctgaggaaggccgactcgctgcccgac
gaccagatcgtctacatgtccaccggctcccagggcgagccgatggcggcgctgtcgcgc
atggccaacggcgaccacaaggtgcaggtcgagaccggcgacaccgtgatcctggcctcg
tccctcatcccgggcaacgagaacgccgtgttccgcatcatcaacggcctcacccgcctc
ggcgcacgcgtcgtgcacggcggcaacgccaaggtgcacgtctccgggcacgcctcggcc
ggcgagctcatgtactgctacaacatcctcaagcccaagaacgtcatgccggtgcacggc
gaggtgcgccacctcgtcgccaacggggctctcgcggtccggaccggcgtgccggccgac
cgcgtggtgctcgccgaggacggcgtggtcgtggacctcgtggacggcaaggcctcagtg
gtcggcgccgtgccctgcgggtacgtgtacgtcgacggctcgtcggtcggcgagatcacc
gacgccgagctcaaggaccgcgtggtcctgggccaggagggcttcgtgtccgtctttgcg
gtgatcgacaccgccacgggcaaggtgctcgcaccgccgcaggtgctggcccgcggtatg
gccgaggatgcctcggtgttcgacaaggtgatgccggaggtcaccgcggcgctcgagagc
gcgatcgcgggcggggccacggacacgcaccagctccagcagatcatgcgccgcaccatc
gggcgctacgtggcgacgcggctgcgccgcaagccgatgatcgtcccggtcgtcgtcgag
gcgtga
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