KEGG   Promicromonospora sp. Populi: AB1046_01145
Entry
AB1046_01145      CDS       T10796                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
prou  Promicromonospora sp. Populi
Pathway
prou03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:prou00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AB1046_01145
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prou03019]
    AB1046_01145
Messenger RNA biogenesis [BR:prou03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AB1046_01145
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: XDS65074
LinkDB
Position
251062..252747
AA seq 561 aa
MSHPHPELSLPPALPEGGLRVVALGGLGEVGRNMAVLEHAGKLLIIDCGVLFPEDNQPGV
DLILPDFDYIKDRLDDIEAVVLTHGHEDHIGAVPYLLRLRKDIPLVGSRLTLAFIEAKLK
EHRIKPYTLEVKEGQREKLGVFDCEFVAVNHSIPDALAVAVTTAAGTLLHTGDFKMDQLP
LDGRITDLRAFARLGEKGVDLFMVDSTNAEVPGFVTPEVEIGPVLDNVFAHADKRIIVAS
FSSHVHRVQQVLRAAHAHGRRVALVGRSMVRNMGIAAELGYLDVPPGVLIDLRKADSLPD
DQIVYMSTGSQGEPMAALSRMANGDHKVQVETGDTVILASSLIPGNENAVFRIINGLTRL
GARVVHGGNAKVHVSGHASAGELMYCYNILKPKNVMPVHGEVRHLVANGALAVRTGVPAD
RVVLAEDGVVVDLVDGKASVVGAVPCGYVYVDGSSVGEITDAELKDRVVLGQEGFVSVFA
VIDTATGKVLAPPQVLARGMAEDASVFDKVMPEVTAALESAIAGGATDTHQLQQIMRRTI
GRYVATRLRRKPMIVPVVVEA
NT seq 1686 nt   +upstreamnt  +downstreamnt
gtgagtcatcctcaccctgaactatccctgccccccgcactgcctgaaggcggactgcgt
gtggtcgccctcggcggcctgggcgaggtgggacgcaacatggcggtcctggagcatgcc
ggaaagctgctcatcatcgactgcggagtcctcttcccggaggacaaccagcccggcgtg
gacctgatcctgccggacttcgactacatcaaggaccgcctcgacgacatcgaggcggta
gtgctgacgcacggccacgaggaccacatcggtgccgtgccgtatctgctgcggctccgc
aaggacatcccgctggtcggctcgcgcctgacgctcgccttcatcgaggcgaagctcaag
gagcaccgcatcaagccctacacccttgaggtgaaggaggggcagcgcgagaagctcggc
gtcttcgactgcgagttcgtcgcggtcaaccactccatcccggacgcgctcgccgtggcc
gtcaccaccgccgcaggcaccctgctgcacaccggtgacttcaagatggaccagctgccg
ctcgacggccgcatcaccgacctgcgcgccttcgcccgcctcggcgagaagggcgtcgac
ctcttcatggtcgactccaccaacgccgaggtgccgggcttcgtgacgcccgaggtcgag
atcggcccggtgctggacaacgtgttcgcgcacgcggacaagcggatcatcgtcgcgtcg
ttctcgtcgcacgtgcaccgcgtgcagcaggtgctgcgcgccgcgcacgcccacggccgg
cgcgtcgccctcgtgggccgctccatggtgcgcaacatgggcatcgccgccgagctcggc
tacctcgacgtgccgccgggcgtgctgatcgacctgaggaaggccgactcgctgcccgac
gaccagatcgtctacatgtccaccggctcccagggcgagccgatggcggcgctgtcgcgc
atggccaacggcgaccacaaggtgcaggtcgagaccggcgacaccgtgatcctggcctcg
tccctcatcccgggcaacgagaacgccgtgttccgcatcatcaacggcctcacccgcctc
ggcgcacgcgtcgtgcacggcggcaacgccaaggtgcacgtctccgggcacgcctcggcc
ggcgagctcatgtactgctacaacatcctcaagcccaagaacgtcatgccggtgcacggc
gaggtgcgccacctcgtcgccaacggggctctcgcggtccggaccggcgtgccggccgac
cgcgtggtgctcgccgaggacggcgtggtcgtggacctcgtggacggcaaggcctcagtg
gtcggcgccgtgccctgcgggtacgtgtacgtcgacggctcgtcggtcggcgagatcacc
gacgccgagctcaaggaccgcgtggtcctgggccaggagggcttcgtgtccgtctttgcg
gtgatcgacaccgccacgggcaaggtgctcgcaccgccgcaggtgctggcccgcggtatg
gccgaggatgcctcggtgttcgacaaggtgatgccggaggtcaccgcggcgctcgagagc
gcgatcgcgggcggggccacggacacgcaccagctccagcagatcatgcgccgcaccatc
gggcgctacgtggcgacgcggctgcgccgcaagccgatgatcgtcccggtcgtcgtcgag
gcgtga

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