Providencia sp. TYF-12: ABE954_02610
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Entry
ABE954_02610 CDS
T11527
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prov Providencia sp. TYF-12
Brite
KEGG Orthology (KO) [BR:
prov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prov03016
]
ABE954_02610
Enzymes [BR:
prov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABE954_02610
Transfer RNA biogenesis [BR:
prov03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABE954_02610
Prokaryotic type
tRNA splicing ligases
ABE954_02610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XEL42447
LinkDB
All DBs
Position
complement(582031..583257)
Genome browser
AA seq
408 aa
AA seq
DB search
MNNNNFNQLIQENGVPVKMWTNGVPVDPKAVTQLQNTAKMPFIFKHLAVMPDVHVGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLTAADLPDSLQNIRFAIEAAVPHGRTTHRH
GRDKGAWYRTPDIVDTHWAHLDEEFKRICDKYPKLRNTNHYKHLGTLGTGNHFIELCLDE
QDRVWVMLHSGSRGVGNAIGNLFITLAQKDMQQHIANLPDRDLAYFKEGSVHFNDYMEAV
GWAQDFARHNREVMMHRVLEALSREIPKPFITEQEAVNCHHNYVQKEQHFGEEVLVTRKG
AVSARKGQMGIIPGSMGAKSFIVRGLGDEESFCSCSHGAGRVMSRTEAKKRFSVSDQKIA
TAHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaataactttaatcaattaattcaagaaaatggcgtgcctgtaaaaatgtgg
accaacggcgtgcctgtagacccgaaagcggtaacacaactacaaaacaccgctaaaatg
ccgtttatttttaagcaccttgcggtaatgcctgatgtacacgttggaaaaggttcgacg
ataggaagtgttataccaaccaaaggggcgattatccctgcggcagttggcgtggatatt
ggctgtgggatgattgccgtgcgtacatcattaacagcggctgatttaccagatagcctg
caaaatattcgtttcgctatcgaagcggcggtaccacatggtcgaacaacccaccgccat
ggacgtgataaaggggcttggtatcgtacaccggatattgtcgatacccactgggcgcac
ttggatgaagagtttaaacgtatctgtgataaatacccaaaactacgtaacactaatcat
tacaaacatttagggacattaggaacggggaaccactttattgaactgtgtttagatgaa
caagaccgtgtatgggtaatgctacatagcgggtcacgcggggtgggaaatgcgataggt
aacttgtttatcacgctggcacaaaaagatatgcaacagcatatcgccaatttgccggat
agagaccttgcttactttaaagaaggtagtgtgcactttaatgactatatggaagcagtg
ggttgggcgcaagactttgctcgccataaccgtgaagtaatgatgcaccgcgtattggaa
gcactatcacgtgaaattccaaagccgtttatcacagaacaagaagccgtaaattgccat
cataactatgtgcaaaaagaacagcactttggtgaagaagtactggtaacccgaaaaggc
gcggtatctgcacgaaaaggccaaatggggatcattccagggtcaatgggggcgaaaagt
tttattgtgcgcggtttaggtgacgaagaaagtttttgttcatgcagccatggtgcaggg
cgggtcatgagccggacagaggctaaaaaacgtttctctgtaagtgaccaaaaaatagcg
acggcccatgttgagtgccgaaaagacagtgatgtgattgatgaaataccgatggcttat
aaagacattgatgcggtgatggctgcgcagtcctcactggtagaaattgttcatacccta
cgccaagtagtatgtgtaaagggataa
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