Providencia sp. TYF-12: ABE954_17315
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Entry
ABE954_17315 CDS
T11527
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
prov Providencia sp. TYF-12
Pathway
prov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ABE954_17315 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prov03400
]
ABE954_17315 (recD)
Enzymes [BR:
prov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ABE954_17315 (recD)
DNA repair and recombination proteins [BR:
prov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ABE954_17315 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
NAT10_TcmA_helicase
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
AAA_22
PhoH
SLFN-g3_helicase
nSTAND3
DEAD
AAA_28
AAA_16
MukB
UvrD_C
AAA
T2SSE
NTPase_1
NB-ARC
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
XEL41117
LinkDB
All DBs
Position
complement(3705058..3706905)
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AA seq
615 aa
AA seq
DB search
MKALFNRGIEERIFTPLDVQFAYSLSEDENPILLMVTAILSAETMAGHVCLALSDIMPEK
LFAGRHPELAAEFWHKMGQPDEQTVYQTLLQANAVSLGNENKTSPLVLSGDYLYFQRMWQ
YEQYVAHYFSNTPIDDKNNQQIKVVLDNLFPISDEIDWQKIAAAVAVTSKVSIISGGPGT
GKTTTVARILAALIKLETKHEYRVRIELAAPTGKAAARLTESLGEAMKHMPLTDDERALL
PHQAKTLHRLLGAQPESQKFRYNRDNRLSLDILIVDEASMVDLPMMGKLLESLPENAKLI
FLGDKDQLASVEAGAVLGDICQFADNGYSLERAAQLSEISGYSIEQYSSTTGPIIRDSLC
LLRKSYRFSADSGIGKLAFAVNAGNVLGVQKLLKQGCFDVHNYVQETADDYAQILLNASE
NYKDYLLAVKSKETPAQVLKKFNQYRLLTALREGPFGVVGLNDKLEKLLHRQGLINRPYN
LLNKHYAGRPIMISRNDSPLGLFNGDIGVILPDENNSLRAYFQFPDGTIRGIQPNRLPQH
ETAYVMTVHKSQGSEFAHTALVLPQVYSPVITRELVYTAITRAKKELSLYGSPKVLRRAI
ETPTKRRSGLAIQLM
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactatttaatcggggaattgaagaacgtatttttactccacttgatgtgcaa
tttgcctatagcctatcagaggatgaaaacccaatactactgatggttactgctattctt
agtgcggaaacgatggcagggcatgtttgcttagcgttatctgacatcatgcctgaaaag
ttatttgcaggtcggcatcctgaactggccgcggagttttggcacaaaatggggcagcca
gatgagcaaacggtttatcaaactttgctgcaagcaaatgcagtttcgttaggaaatgaa
aataaaacgtccccgttggttctgtcgggagattacttatattttcaacgaatgtggcaa
tatgagcagtatgttgcgcattatttttctaacaccccaatagatgataaaaataaccaa
caaatcaaggtggttttagataatttatttccgatctcagatgagattgattggcagaaa
attgcagctgctgttgccgtgacgagtaaagtctccataatttctggggggccgggaaca
gggaaaacaacaacggtcgcgcgtatcctcgctgcattaattaaactggaaactaagcat
gagtatagggtcagaattgagcttgcggcgcctacaggtaaagcggctgcaaggctaacc
gaatctttaggagaggcaatgaaacatatgcctttaaccgatgatgagagggcgttatta
ccacatcaagcgaaaacacttcatcgtttacttggtgctcagcctgaaagccaaaaattt
cgctataaccgagataaccgattatcgctagatattttaattgttgatgaggcatcaatg
gtcgatttaccgatgatgggtaaattacttgagtcgctgcctgaaaatgcaaaacttatt
tttcttggtgataaggaccaacttgcatctgttgaagcaggggctgtactcggggatatt
tgccagtttgcagataatggctacagccttgaacgagcggctcagctttctgaaatatcg
ggttattctatcgaacaatactcttcgacaacaggtccgataattcgcgatagtttgtgt
ttattgcgcaaaagctaccgtttttctgctgattcaggaattgggaaacttgcttttgct
gtaaatgcgggaaatgtacttggtgttcaaaagttattaaagcaaggctgttttgatgtg
cataattatgtgcaagaaacggcagatgattatgcacaaattttattaaatgcctctgaa
aattataaagattatttattggctgtaaaatcaaaggaaacgccggctcaggttttaaaa
aagtttaatcaatatcgtttattaaccgctttacgggaaggcccttttggggtagtaggc
ctgaatgataaattagaaaaattattacatcggcaagggttaataaaccgtccctataat
ttattaaataaacactatgctggccggccaatcatgattagccgcaacgatagcccacta
gggttattcaatggggatattggggtcatattacctgatgaaaataatagcctgagagct
tactttcaatttccagatggcactattcgtggaatacaaccgaaccgtctaccacagcat
gaaaccgcttatgtgatgacggttcataaatcacaaggttcggagtttgctcataccgca
ttagtgttaccgcaggtatattcacctgttattacacgtgaactcgtctataccgcaata
acccgagcaaaaaaagaattgtccctttatgggagcccaaaagtattacgtcgagcaatt
gaaacgccgacaaaacggcgcagtggtttggcgatacaattaatgtga
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