Providencia sp. TYF-12: ABE954_17320
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Entry
ABE954_17320 CDS
T11527
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
prov Providencia sp. TYF-12
Pathway
prov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ABE954_17320 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prov03400
]
ABE954_17320 (recB)
Enzymes [BR:
prov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ABE954_17320 (recB)
DNA repair and recombination proteins [BR:
prov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ABE954_17320 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
XFP_C
AAA_11
Motif
Other DBs
NCBI-ProteinID:
XEL41118
LinkDB
All DBs
Position
complement(3706889..3710518)
Genome browser
AA seq
1209 aa
AA seq
DB search
MNNAQIGSQLLNVFSLPLQGQRLIEASAGTGKTYTIGILYLRLLLGLGGANAFSRPLSVE
EILVVTFTEAATNELRGRIRQRIHEMRLVCLRNGVGFESQPEYLELLSELPEGLQREFAQ
EWLLAAERQMDEAAIYTIHGFCQRMLVHNAFESGVLFEQTMVQDEFPIQKQACADFWRRH
FYPLNYSMTKVIQSLWNSPESLLTEIKPFLQGDIPVIINQPQQIETLEERHQRLISLIDS
VKASWLEHSADFEKLITDSDVDKRSYSSRFLPSWLTKIAQWAQEPTEDYQLPKDLVRFSQ
TTLHEKSKSGSGPEHIVFQHIDNLLSQSLTLKDLIIPLAISEVRQTITREKHNRGEMGFD
DLLTRLDSALSQESGKFLAHAISQRFPVAMIDEFQDTDAQQYRIFQRIYQGVENSALLFI
GDPKQAIYAFRGADIFTYIEAKKEVSAHYTLETNYRSSQSMVEAVNHIFSHCESPFIFDQ
IPFQPVNFAPQNSGKKLVHNGDEVNALTFWQLGAEGVSVAEYEQAIASQCAAQIAQYLLG
GLRGDTYFDNKGKCTPVAASDITVLVRSRREAVLIRDALNQLNIASVFQSNRESVFSTPE
ARDLLWLLQAVLSPEKERVLRSALATGILGLSAKQIDDLNHDEKAWEQLVDEFARYAQVW
QKRGVLPMLRMVMAQRHIAETLLSGIDGERRLMDVMHIGELLQEMSLQLEGEHTLTRWLA
QQIAHPDHQSDAQQMRLESDKHLVQISTIHKSKGLEYKIVWLPFASNFLPQSKGLYHDRT
DFGTRLDLSDGEDTVALADEERLAEDLRLLYVALTRAIYHCSVGVAPLIKGNRKKSGETD
LHLSALGYVIQKGQAGDSQLLNEMLDELSNDVINVTVIDVPEFERLTLESNHDENLAARE
VTRYFDDHWRVTSYSGLSYGSNHSEDGQAVSALQFANSLAPNMDTEVSVDVEQQEGENSA
EFLTPHQFPRGALPGTFLHTLMEEIDFSEAISVEWLTEKLEAAGFGIQWAPMLQEWLNAI
VQAPLADDGLCLSALQPQDQLDEMQFYIPIESELTANHLDKIAHQYDPLSQRCPPLNFEK
VQGILKGFIDLTFFWGGKFYLLDYKSNYLGEDASFYTQEAMAEAMIDHRYDLQYQLYSLA
LHRYLKQRLPDYDYETHFGGVYYLFLRGIDKVNSHNGVFFYRPLEAFIGELDLLFQGRQQ
GEVLNESTI
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacgcgcagatagggtcccaattactgaatgttttttcattaccgttgcaaggg
cagcgtttaattgaagcatcggcaggaaccggtaaaacatacacaataggtatactttat
ctgcgtcttttattaggtttagggggggcgaacgctttctctaggcctttgagtgttgag
gaaattttagttgtaacctttactgaagcagcaacgaatgagctacgcggtcgtattcgt
cagcggatacatgaaatgcgcttagtgtgtttaagaaatggcgttggttttgaatcacag
ccagaatatcttgaactattaagtgaacttcccgagggtttacaaagggaatttgcccaa
gaatggctattggcggcagaaaggcaaatggatgaagctgctatctacactattcatggt
ttttgccaaagaatgttggttcataatgcatttgaatcaggtgtgttatttgagcaaaca
atggttcaagacgaatttccgattcaaaagcaagcttgtgcagatttctggcgtcgtcat
ttttatccgttaaattattcgatgacgaaagtcattcagtcattgtggaacagccctgag
tcattgttaacagagataaaaccttttttgcaaggtgatattccagttattattaatcag
cctcaacaaatagaaacactagaggaacgacaccagcggttaatctcattaattgattca
gttaaagcatcttggctagaacattccgctgatttcgaaaagctgattacagattctgat
gttgataaacgaagttatagttcccgtttcttaccttcttggttgacaaaaatagctcag
tgggcgcaagagcctactgaggattatcagttaccaaaggatctcgttcgtttttcacaa
actacattgcatgaaaaatctaaaagcggttctgggccagaacatattgtttttcaacat
atagacaacctactttctcaatcattaacacttaaagaccttattattccactcgcgatt
tctgaagttaggcaaactattactcgagaaaaacacaatcggggagaaatggggtttgat
gacctattaactcgtttagatagtgctcttagccaagagagtgggaaatttttagctcat
gctattagccagcgttttcctgtggcaatgattgatgagtttcaagatacagatgcacaa
caataccgtatttttcaacggatttaccaaggtgttgaaaacagcgccttactttttatc
ggtgaccctaaacaggctatttatgcctttcgtggtgcagatatttttacttatattgaa
gccaaaaaagaagttagtgctcactacacattagaaactaattaccgttcatctcaaagt
atggttgaggccgttaaccatatctttagtcattgcgagtctccgttcatatttgatcaa
ataccttttcaaccagttaactttgccccacaaaatagtgggaaaaaattggtccataat
ggtgatgaagttaacgctctcactttttggcaattgggtgcagagggggtttctgtcgcg
gaatatgagcaagcaatagcgtcacaatgtgcggcacaaatagctcagtatttactaggt
gggctgcgaggggatacttattttgataataaaggtaagtgtactcctgttgcagcttca
gatattaccgtcttggtacgtagccggcgagaggccgtattaattcgcgatgctttaaat
caactgaatatagcttctgtttttcaatccaatagggaaagcgtattttccacccccgaa
gctagggatctgttgtggttattgcaggcggtattatcccctgaaaaagaacgcgttttg
cgtagtgcattagccacagggatattaggtttatcagcaaagcaaatagatgaccttaat
cacgatgagaaagcgtgggaacaattagtagatgaattcgctcgttatgcacaagtgtgg
caaaaacgtggtgtactcccaatgcttcgcatggtgatggctcagaggcatatcgctgaa
acattattatctggaattgatggcgaacgccgattgatggatgtaatgcatattggtgaa
ctgttgcaagaaatgtcactacaacttgaaggtgagcacacacttactcgatggttagcg
cagcagattgcacacccagaccatcaatcagatgcgcaacaaatgcgccttgaaagtgat
aaacatctggttcaaattagtacaattcataaatctaaaggtcttgaatacaaaattgtt
tggttaccttttgccagtaattttttacctcagtccaaagggttatatcacgacagaaca
gatttcggtacaaggctagacttgtctgatggtgaagataccgtggccttggctgatgaa
gagcgattagctgaagatttgcgtttattatacgtagccttaactcgggctatctatcac
tgtagtgtgggggttgcgccgctgatcaaagggaatagaaagaaaagtggtgaaacggac
ttacatttatctgcgcttggatacgtcatacaaaaagggcaggcaggagatagccaactg
ttaaatgagatgctcgatgaactcagtaacgatgtaattaatgttactgtcattgatgta
cctgaatttgaacgtttaactcttgagtcaaatcatgatgaaaacttagcggcaagggaa
gtcactcgctattttgatgaccactggcgtgttaccagctattcggggctaagttatggt
tctaaccattcagaagacgggcaagccgtatctgctctacaatttgcaaattcactagca
ccaaatatggatactgaagtcagcgttgatgttgagcaacaagaaggtgaaaattcggct
gaatttttaacgccccatcaattccctagaggggcattgccggggacctttttacatact
ctgatggaagagattgatttctctgaagcaatttcggttgaatggttaactgaaaaatta
gaagcggcagggtttggtattcaatgggcacctatgttgcaagagtggttaaatgcgatt
gttcaggctccgttagcagatgatggcttatgtttatctgcattacagccacaagatcag
ttagatgaaatgcaattttatatccctatagaatcggaactcacggctaatcatttagat
aaaattgcccatcaatatgacccgctatctcagcgttgccctccgttgaattttgaaaag
gtacaagggattttaaaagggtttattgatttgacttttttttggggtggcaaattttat
cttcttgattataaatcaaattacctgggtgaggatgctagcttttatactcaagaagca
atggccgaagccatgatcgatcaccgatatgatttacaatatcaattatattccttggca
ctacaccgctatttaaaacaaaggttacctgattatgattacgaaacgcattttggtggt
gtgtattacttattcttaagagggattgataaggtaaattcgcataatggggtctttttt
tatcggcctttagaagcttttattggggaattggatctcctttttcaaggtaggcaacaa
ggggaggtgctgaatgaaagcactatttaa
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