Providencia sp. TYF-12: ABE954_20095
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Entry
ABE954_20095 CDS
T11527
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prov Providencia sp. TYF-12
Pathway
prov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE954_20095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prov03019
]
ABE954_20095
03009 Ribosome biogenesis [BR:
prov03009
]
ABE954_20095
Enzymes [BR:
prov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABE954_20095
Messenger RNA biogenesis [BR:
prov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABE954_20095
Ribosome biogenesis [BR:
prov03009
]
Prokaryotic type
rRNA helicases
ABE954_20095
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XEL41649
LinkDB
All DBs
Position
complement(4297624..4299549)
Genome browser
AA seq
641 aa
AA seq
DB search
MTTETDISFADLGLSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAA
FSLPLLQNIDPDLKAPQILVLAPTRELAVQVAEAMSDFSKHMSRVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNADLLSQRRQEKFAEKIQQQLESSDLDQYRSLLAKMSPSEDVDME
TLAAALLKMAQGERALILPPDAPRRPRREFNDRDDRRGDRRDRNSNGNGFDRAERGERGG
RRERRDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLFGTHSTIELPKG
MPSEVLTHLSRARVLNKPMQMQLIGDAQPFERRGGGERRGGPRREGGSEGGFGAGRRNDR
GGERRSNGGGERRGGGNRGNAAPRQDGTNAAPRRRSSSHNA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagaccgatatttcttttgctgatttaggtttatcagcatctattttgaca
gcactgaacgacctgggatacgaaaaaccatcaccaatccagcaacaatgtattccatta
ttaatggatggtaacgatgtattaggtatggcacaaaccggtagtggtaaaaccgctgca
tttagtttgccattactgcaaaacattgacccagatttaaaagctccgcaaattttagtt
ctggcaccaactcgtgagttggctgttcaggtagctgaagcgatgagcgatttctctaaa
catatgagccgcgttaacgtcgttgctctatatggtggccaacgttatgacgtgcaattg
cgcgcgttacgccaaggtccacaaatcgttgtgggtacacctggccgtcttcttgaccat
ctgaagcgtggtactttagatctttctaaattaaaaggcttagtcttagacgaagctgat
gaaatgctacgaatgggctttattgaagatgttgaaaacatcatgagccaaattccagca
gagcaccaaaccgcattgttctctgcgacaatgcctgagccaattcgccgtattacgcgt
cgctttatgaaagaacctaaagagattcgtattcaggcaagcattaccacacgtcctgac
attgctcaaagctactggactgtttacggtatgcgtaaaaatgaagcgttagttcgtttc
ttagaagcagaagattttgatgcggcgattattttcgtccgtactaaaaatgcaacatta
gaagtcgcagaagcattagagcgtaacggctataacagcgcagcgctgaatggtgacatg
aaccaagctctgcgtgagcagacattagagcgcctgaaagatggtcgtttagatatcttg
attgcgactgacgtggcagctcgtggtttagacgttgagcgtattagcttagtcgttaac
tatgatatccctatggatgctgagtcttatgttcaccgtattggtcgtactggccgtgca
ggtcgtgcgggccgtgccttactgttcgttgagaaccgtgagcgtcgcctgttacgtaac
gttgaacgtacgatgaaactgactattcctgaagttgaactgccaaatgcagatttgtta
agtcaacgtcgtcaggaaaaatttgctgaaaaaatccagcaacaattagaaagcagcgat
ttagaccaatatcgttcactgttagcgaaaatgtctccatcagaagatgttgatatggaa
actctagcagcagcgttactgaaaatggctcaaggcgaacgcgccctgatcctaccacca
gatgcacctcgtcgtccgcgtcgtgaattcaacgaccgtgatgatcgccgtggtgaccgt
cgtgaccgcaatagcaatggtaatggttttgaccgtgcagagcgtggggagcgtggcggt
cgtcgtgagcgccgtgatgttggcgatatggaaatgtatcgtatcgaagttggtcgcgat
gacggtgtggaagttcgtcatattgttggtgcgattgctaacgaagcggacatcagtagc
cgttatattggtaatatcaaactgtttggtactcactcaaccattgagttaccaaaaggt
atgccaagcgaagtgttaactcacttaagccgtgcacgtgtattaaataaaccaatgcaa
atgcaactgattggtgatgcacaaccgtttgagcgtcgtggcggtggtgagcgtcgtggt
ggtcctcgtcgtgaaggtggtagcgagggaggtttcggtgcaggtcgtcgcaatgaccgt
ggtggtgagcgtcgtagcaacggtggtggtgaacgccgtggcggtggtaaccgtggcaat
gcagcacctcgccaagatggtactaatgcggcacctcgtcgtcgtagcagcagccataac
gcgtaa
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