Prosthecochloris sp. SCSIO W1101: OO006_04150
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Entry
OO006_04150 CDS
T09696
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prow
Prosthecochloris sp. SCSIO W1101
Pathway
prow03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OO006_04150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prow03400
]
OO006_04150 (mfd)
Enzymes [BR:
prow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OO006_04150 (mfd)
DNA repair and recombination proteins [BR:
prow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OO006_04150 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZJ42177
LinkDB
All DBs
Position
complement(873546..876863)
Genome browser
AA seq
1105 aa
AA seq
DB search
MQDSHENPGSRGRQKNTNASVTRRKTFYLLNALGMHPTYADIKQKLNFPEHTNTASPTLN
LSGLQGSLSFLLAAQLFNXYGVPLLIIGSQASFDIYDNDLPGLLGPATVHTRSDELPAAL
GALLEXPATVLLAAFDDVVTPLXKPEGSRKRLFRLEKDQEAGYTTLTDFLCENGYNRMEF
VEEEGQFSTRGSIVDIFPFGSRXTVRMEFFGDTVTSTRSFDTNSQLSGAQLDAVVLTGNF
FSEKHHDDDKGPSWCLLDYLPPETMILIDDIASFNAFEKKAAVEKKLEGFPCLCINRLEK
QTLDFHSEAQTKLNANFKLFARELNREKPDKRHTVFVGRSKKEIEELVEFVSEEARDIRR
TIPVEFNWVALNLHSGFVFNGLDIYTESDIFGKLHTHKSHKKRAFKGISLKDLQTLKVGD
YIVHEDYGIGIFKALETIEVGXXPQESVLIEYQGGDELYVNVQNIRLISKYNASEGSMPT
LSKLGSPKWKAKKEKVKKRLKDIASKLIKLYAKRKMTPGFAFGQDSIFQREFEASFIFDE
TVDQLKTIEEVKNDMRSQSPMDRLICGDAGFGXNEIAMRAAFKAVESKXAVAVLHPTTIL
AHQHAETFKRRFENFPVNIAVLSRFVSRKEQKELVEKISRGLVDIVIGTHRLVSKDVLFQ
DLGLLIIDEEQHFGVAVKEKLRQSFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPR
NRQPVETVITQFNPDTIREAIQHEINRQGQVFFLHNRISGLDQVRNTLHELIPEAKTAIA
HGQMPTAELENVMMRFINHELDVLISTSIIGSGLDISNANTIIINRADMFGLSDLYQLRG
RVGRSERKAYSYLIIPSADTLKREAMERLAVIESFTELGFGFNIAMRDLDIRGAGNLLGA
EQSGAIHELGFDLYQKLLEEAVSELKSGEFSQLFTPNESQPVQMEGNTDMGFYFDALIPE
YYISATQERFTFYEKISKSQTDDAIDSIRDELRDRFGPLPEDVENLIGVAKLKNLCSVIG
LSKVDIQPRTLTIILPGENNAEFYNRPFFQELIASLQSEWMQKXHPRFQQGKKMKLLLHN
PPDNPAEPAVLMERYRSLLKKLNHA
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgcaagactctcatgaaaacccnggcagccggggcaggcaaaaaaacacgaacgcatca
gtcaccagaagaaaaaccttttacctgctgaacgctctcggcatgcatcccacctatgcc
gacatcaaacagaaactcaactttccggaacacacgaatacagcctcaccgaccctgaac
ctttcaggtcttcagggttccctctcnttcctgcttgcagcacagttgttcaatgantac
ggagttcctcttctcatcataggttcccaggcatccttcgatatctatgataacgacctg
cccggccttctaggtcctgcaacggttcacacncgttcggacgaacttccggcggcactc
ggcgccctnctcgaaaanccngcgactgttcttcttgccgcctttgatgatgtagtgact
ccgctacanaaacccgaaggctcnagaaagaggctttttcgtcttgaaaaagatcaagag
gccggttataccacgttgacggattttctntgcgaaaacggttataacagaatggagttc
gttgaagaagaagggcaattctcaacgcgcggctcgatcgtcgacatatttcctttcgga
tcgcgtganaccgtcagaatggagttcttcggagacaccgtcacctcgacccgctcgttt
gataccaacagtcagctatcaggtgcccaactcgacgccgtcgttctgacaggtaatttt
ttttccgaaaagcaccatgatgacgataaaggcccctcctggtgccttctggattacctg
cccccggaaacgatgatcctgatcgatgacattgcctccttcaacgcttttgaaaagaaa
gccgctgttgaaaaaaaactggaaggttttccctgtctctgtataaaccgtcttgaaaaa
caaacgcttgattttcattcggaggcacagacaaagctgaacgcaaatttcaaactgttc
gcgagggaactcaaccgggaaaagcccgacaagcgacataccgtcttcgtcggtcgttca
aagaaggaaatcgaggaacttgtagaattcgtttccgaagaagcccgggacatcagaaga
acaataccggtcgagttcaactgggtagccctgaacctgcattccggctttgtcttcaac
ggccttgacatctatacggaatctgatattttcggtaaactccatacccataaatcccac
aagaaaagagccttcaaagggatctctctcaaagacctgcagacactcaaggtaggagac
tacatcgtccatgaagattatggaattggcattttcaaggctcttgagaccattgaagta
ggtaanttnccgcaggaaagcgttttgatagaatatcagggcggcgacgaactctacgtc
aacgtacagaacatccgcctcatctcgaaatacaacgcctccgaaggctccatgccgacg
ctttcaaaacttggaagtccaaagtggaaagccaaaaaagaaaaggtaaaaaaacgtctc
aaggatattgcctccaagcttataaagctctatgcaaagcgaaaaatgacaccaggattt
gcatttggacaggattcgatatttcaaagagagttcgaagcatcgttcattttcgatgaa
accgtcgatcagttaaaaacaatcgaggaagtcaagaacgacatgcgttcccagtcacca
atggatcgcttgatctgtggtgatgccggtttcggtaanaacgaaatagcaatgcgagcc
gcattcaaggctgtcgaatcaaaaaangcagtcgctgttctncaccccacaaccatcctt
gcccaccagcatgccgaaacgttcaaacgaagatttgaaaacttcccggtcaatatagcg
gtcctcagcaggttcgtcagccgaaaagaacaaaaagaacttgtcgaaaaaatttctcga
gggcttgtagatatagttatcggtacacatcggctggtttcaaaagacgttctgtttcaa
gatctcggtcttctcatcatcgatgaagaacaacatttcggagttgcggttaaagagaag
ctgcgccaatcttttccaggagtggatacgctcaccatgtctgcaacgccgatcccgaga
accttgcagttttcgatgctcggggcaagagacctttccatagtatcgacacctccccga
aatcgtcaacctgttgaaacagtcatcacacagttcaaccccgacactatccgagaagcg
atacaacacgaaatcaaccgccaaggtcaggtttttttcctgcataaccgcatctcggga
ctcgatcaggttcgaaatacgcttcacgaactcattccggaagcaaaaaccgccattgca
cacggccaaatgccaactgcagaacttgaaaacgtaatgatgcggtttatcaaccatgag
cttgatgttctcatttccacctctatcatcggctctgggctcgatatttcgaatgcgaac
acgatcattatcaacagagcggacatgttcggtctttccgacctctatcagctcagagga
cgtgtaggtcgaagcgaaagaaaggcttacagttaccttatcatcccttctgccgacacc
cttaaaagagaagccatggaaaggcttgccgtaatcgaaagctttaccgagcttggnttc
ggtttcaatatcgcaatgagagatctggatatacgaggcgccggaaaccttctcggtgca
gaacagtcgggagcgattcatgaacttggcttcgacctttaccagaaactgcttgaagaa
gccgtatcagaactgaaatcaggtgaattcagccagcttttcaccccgaacgagtcacaa
ccggtccagatggaaggcaacaccgacatggggttttatttcgacgccctgatacccgaa
tactatatatcggctacacaggaacggtttaccttttatgaaaaaatctccaaaagtcag
acagatgacgccatcgactcgatcagggatgaactgcgtgaccggttcggacctcttccg
gaagatgtcgaaaaccttataggcgttgcgaaacttaaaaacctttgttcagttatcggt
ctgtcaaaagtcgatatccagccacgaacacttacaatcatccttccgggggaaaacaac
gctgaattctacaatcgtcctttttttcaggaactcatcgcttccctgcagtccgaatgg
atgcagaaatancacccccgttttcagcagggcaaaaaaatgaaacttctcctccataat
ccacctgacaaccctgctgagcctgccgtactgatggaacggtatcgttctcttcttaaa
aagctcaatcatgcctga
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