Prosthecochloris sp. SCSIO W1101: OO006_05535
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Entry
OO006_05535 CDS
T09696
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
prow
Prosthecochloris sp. SCSIO W1101
Pathway
prow03030
DNA replication
prow03430
Mismatch repair
prow03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OO006_05535 (dnaE)
03430 Mismatch repair
OO006_05535 (dnaE)
03440 Homologous recombination
OO006_05535 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prow03032
]
OO006_05535 (dnaE)
03400 DNA repair and recombination proteins [BR:
prow03400
]
OO006_05535 (dnaE)
Enzymes [BR:
prow01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OO006_05535 (dnaE)
DNA replication proteins [BR:
prow03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OO006_05535 (dnaE)
DNA repair and recombination proteins [BR:
prow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OO006_05535 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
UZJ42416
LinkDB
All DBs
Position
1171660..1175223
Genome browser
AA seq
1187 aa
AA seq
DB search
MDFVHLHTHTHFSMQSSPIFPHELFAACQKSAMHTVAVTDYAATFNMPELFSLADEAGVR
LIIGSEIYLLERDAYHNGKSFSSPSLILLVKNEEGYRNLCVLLSKAAREGFINGMPHVDS
XWLADACDGLXCLSAYYAGRIGRALLAGNFEEATSFTTFYKDIYGEDFFLELQRHHTSFD
EKLNADTIRLAEENGVKLVATNNVHYLERKDADRYRAMVAIRTKEKLSSNQLQCLPSSEN
YFRSSKEMADLFDDAHGELSNTVSIAEKCTYRFRKEEPKLPHFPLPAGFDDEVQYLRHLT
YEGAKEKYADPESQGLSEKMVNERIEKELETISSMGFSSYFLIVSDLIAASRRMGYSVGP
GRGSAAGSIVAYLTGITSIDPLRYKLLFERFLNPERGSMPDIDIDFTPVGKQKVLEYTVE
KYGEESVAKVVAIGTLGARAAIRDAGRVLEVPLSVVDRLAKLVPGKPGITLKKAIDDVGE
LKDLVKSSSRNANLMDYAQALEGRARNVSMHAGAVVITNGRLDEQVPLYVSNKIETEERK
YADEMKQDELERGAAKSGSDDKQVVTQFDKNWIENAGLLKIDYLGLETLAVIDETLHLIR
KRHGVSVDLEKVPMDDRKTFRIFQEGKMAGIFQFESQGMQNYMTKLQPTQIGDIIAMSAL
YRPGALNAKIDEKRNAVDLFVDRKHNREPIDYMHPMLEDFLKETYGVIVYQEQVMQISQV
MGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVKQGVHDKLANRIFDLMAEFAGYGF
NKSHSAAYGVLAYWTGYLKAHYPAEFMTAILNSEIGDAARMKHLTDEAKGFNIPVLPPSV
NKSDALFAIEVADEKAMIRVGLNAIKQVGNAARAVVSARLLRKKNFINLFDLTASVDLRV
MNRKALECLILAGALDDLDQDRAKLLANIDKAIRFGQLQNKSVTLGQCGFFSDESNEALH
DSLYPDMDAAQPMPESERLQAEKKLVGFYLSRHPLEPYRRDWDAFANLPLNTRSVQQARQ
YKVIGVVVSVRHHQDRKGKQMLFGSIEDFTGKADFTVFASVYEQYRHLLKPEEVLMLIVE
AEVSGGMLKLLVREVVPIKQVRETCIDKVILKIDADDPSELEKLERVKKVLEEHKGGTAV
DFEVKVQAAENIELLRVFARRSPIDADEKTLGELENILGPDNVKIAG
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggattttgtgcatttgcatacgcatactcatttttccatgcaaagcagtccgattttc
ccgcatgaactttttgcggcttgccaaaagagtgcaatgcatactgttgcggtcaccgat
tatgctgcaaccttcaatatgcctgagcttttcagccttgcagatgaggctggtgtcaga
ctgattatagggagcgaaatatatcttctcgagcgagatgcatatcataacggcaagagc
ttttcttcaccttcattgatattgctggtgaagaatgaggaaggttacagaaacctttgt
gttttactctcgaaagccgctcgtgagggctttatcaacggcatgccacatgttgacagt
aantggcttgcggatgcctgtgatggattgatntgcctctctgcctactatgccggccgt
atcggtagagcgctgctggcaggtaacttcgaggaggcaacttcgtttacgactttctac
aaggatatatacggtgaagattttttcctcgagttgcagcgccaccatacttcattcgat
gaaaagctcaatgccgatacgattcggcttgccgaagagaacggtgtaaagctggttgct
accaataatgttcattatctcgaaagaaaagatgctgatcgttaccgggctatggtcgct
attagaaccaaagaaaagttatccagcaatcagctccagtgtctaccgagcagtgaaaac
tatttcagatcttcaaaagagatggccgatctgttcgatgacgctcacggtgaactctca
aatacggtcagcattgcggaaaagtgtacatatcgctttcgaaaagaagagccgaagctt
cctcattttcccctgcctgcaggatttgacgatgaggtacagtatctgagacatttgaca
tatgaaggcgcaaaggaaaagtacgctgatcctgaatctcagggcctttcagaaaaaatg
gtcaacgagcggattgaaaaagaactggaaactatttccagtatggggttcagctcctac
ttcctgatagtcagcgaccttattgctgcgtcacgccgtatgggatattctgtcgggccg
ggaagagggtctgcagccggaagcatcgtcgcctatctgacgggtattacaagcatcgac
cctttgcgttacaagttgctttttgaacgttttctcaatccggaaagaggatcgatgccg
gatatcgatattgattttacgccggtcggcaagcaaaaggttctcgaatataccgttgag
aaatatggtgaagaaagtgtcgcaaaagtcgttgcgatcggtacgctcggagcaagagct
gcaattcgagacgccggacgtgtactcgaagtgccgcttagcgttgttgaccggttagcc
aaacttgtgccgggaaagcctggaataaccttgaagaaggcgatcgatgacgtaggtgag
ctcaaagatttagtcaaaagttcttcaagaaatgccaatttaatggactacgcccaagct
cttgaagggagggcgaggaacgtttcgatgcatgctggtgcggttgtcattaccaacggc
aggcttgacgagcaggtgcctctgtatgtctccaacaaaatcgagacggaagagcgcaaa
tatgccgatgagatgaaacaggacgagcttgagcgtggagcggcgaagtcaggtagtgat
gataaacaggttgtgacgcagtttgacaaaaactggattgaaaacgcaggactgctcaaa
atcgactatttaggacttgaaacccttgcagtcattgatgagacacttcatctgatcaga
aaaagacatggcgtttctgtcgatctggaaaaggttcctatggatgacagaaagactttc
aggatttttcaggaaggtaaaatggctgggattttccagtttgaatcccagggcatgcag
aattacatgacaaaacttcagccgacgcagattggtgatatcatagccatgagtgcgctg
tatcggccgggggctctcaatgccaaaatcgatgagaagcgaaatgcagtcgatctgttt
gtcgaccggaaacataatcgtgaaccgatagactacatgcatccaatgcttgaggatttt
ctcaaagagacgtatggggtgattgtgtaccaagaacaggtcatgcagatctcacaggtc
atgggtggtttttctctggcaaaagcggataatctccgcaaggcaatgggtaaaaagaag
ccggagatcatgcagaaattcaaggcggactttgtcgagggtgctgttaaacagggcgtt
catgacaagctcgccaacaggatttttgatcttatggcggaatttgccggatatggtttc
aataaaagccactcggcggcttatggtgttctcgcttactggacaggatatttgaaggcg
cattatccggctgagttcatgacggccattttgaacagtgaaattggtgatgcagcaaga
atgaagcacctgaccgatgaagctaaagggttcaatattcctgtgttgcccccatcggtg
aataagagtgatgccttgtttgccattgaagtggctgatgaaaaggcgatgatacgcgtc
ggtttgaatgctataaagcaagttggtaatgccgctcgagcggttgtttctgcaaggttg
ctaaggaaaaaaaactttatcaacctttttgatctgaccgcatcggtcgatttgcgtgtt
atgaacagaaaggcgcttgaatgcctcattttggccggtgctctcgatgatcttgatcag
gatagggcgaaactgcttgccaatattgacaaggcgatccgcttcggtcaacttcaaaac
aagtcggtgacgcttggccagtgtggatttttcagtgatgaatccaacgaggcgcttcat
gattcgctgtaccctgacatggatgctgcacaaccgatgccggaaagtgagcggttgcag
gcggagaaaaaacttgtcggtttttatcttagccgtcatccnctggaaccgtatcgtcga
gactgggacgcttttgcaaatcttcctctcaacaccaggagtgtacaacaggcaagacag
tacaaagttatcggtgtcgttgtgtcggtacgtcatcatcaggacagaaaaggtaaacag
atgcttttcggtagcatcgaagactttaccgggaaagctgattttaccgtttttgcaagt
gtttatgaacaataccgccatcttctcaaacctgaagaggttttaatgctgattgtagag
gctgaagtcagtggaggcatgctgaagctgcttgtcagggaggttgttccgataaaacag
gtacgcgaaacctgtatcgataaagtcattttaaaaatcgatgccgatgatccaagtgaa
ctggaaaagctggaaagagtgaaaaaggttttggaggagcataaaggcggaactgcggtt
gatttcgaagtcaaggttcaggcagctgaaaatattgaactgttgcgtgtatttgcgagg
agaagccctattgatgccgatgaaaaaacactcggtgagcttgaaaatattctcggccct
gataatgttaagattgccgggtag
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