Prosthecochloris sp. SCSIO W1101: OO006_12745
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Entry
OO006_12745 CDS
T09696
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
prow
Prosthecochloris sp. SCSIO W1101
Pathway
prow03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prow00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OO006_12745 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prow03021
]
OO006_12745 (rpoC)
03400 DNA repair and recombination proteins [BR:
prow03400
]
OO006_12745 (rpoC)
Enzymes [BR:
prow01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OO006_12745 (rpoC)
Transcription machinery [BR:
prow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OO006_12745 (rpoC)
DNA repair and recombination proteins [BR:
prow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OO006_12745 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
E1-N
Motif
Other DBs
NCBI-ProteinID:
UZJ41196
LinkDB
All DBs
Position
complement(2743017..2747522)
Genome browser
AA seq
1501 aa
AA seq
DB search
MIFSQGASPIKGDFSKIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTMKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERIIYYEVYVVINPGEPGEKQGIKKLDRLTEEQYFQIITEYEDNQDLD
DNDPAKFVAKMGGEAIHTLLKGLDLDSQAVELRKILRESGSEQKKADALKRLKVVEAFRK
SYEPVKKSRKKSTGLFPEDEAPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFV
IRRLVERGIAKSVKSAKKLIDKKDPVVWDVLEKVIDGRPVLLNRAPTLHRLGIQAFQPVL
IEGKAIQIHPLVCTAFNADFDGDQMAVHVPLSQEAQLEATLLMLSSHNLILPQSGKPVTV
PSQDMVLGMYYLTKSRLGEKGQGQLFYGTEEVMIAYNEERIGLHALVFVKYSGKIEQKFD
PLRMLDIIPEENVEQKEWLKKEIEESRILVTTVGRVIFNQYVPEKIGFINKVIDKKGAKE
LISKLSGEVGNVAAAEFLDNIKEVGFHYAMKGGLSIGLADAIIPEAKIQHIKKATRESNK
IVREYNRGTLTENERYNQIVDVWQKVTNLVAEESYQKLRKDRAGFNPLFMMLDSGARGSR
EQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFVSTHGARKGLSDTS
LKTADAGYLTRRLHDVAQDVIVTEEDCGTTRGIHVERGIEEETGGQIKFSEKIRGRVASR
DIIDTLADEIIVPAGGIITDEIADAIQKNVGVTEADIRSVLTCEAKQGICSKCYGTNLAV
HKLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAQGGIAETETKSSCEGQVEFESIRS
VEQETISEDGVPETQILVIQKNGKINIVDPDSGKILKRYEVPHGAHLASKNGDLVKKDDV
LFSSEPNSTQIIAEIEGQVKFVDIEKGVTYKEEVDPQTGYVQHVIINWRTKLRASETREP
RILIVSDAGEILKTYPVPIKSNLFVEDGRRVKVGDVMAKVPRNLDRVGGDITAGLPKVTE
LFEARIPSDPAIVSEIDGYVSFGPQRRSSKEIKVKNEFGEEKNYYVQVGKHVLANEGDEV
NAGEPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQK
VRVEEPGDTELLSGDLIDRTVFIEANRDVAEKVRVTERGDAPPRIQEGQLYKMRDITKLN
RELRRNSKKLIAIEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGKI
DNLAGLKENVIVGKLIPAGTGLKKYRKLNLAFPENGEGSTAAFESEDADLDGSVIEEDAT
E
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgattttttcacagggagcttcaccgataaaaggtgatttttcaaagataaaattcagc
atcgcatctcctgaaagcattctcgcacattcaagaggtgaggtactcaaacccgagaca
ataaactatcgcacgttcaagccggaaagagacggattgatgtgtgagaaaattttcggt
ccgacaaaagactgggaatgctattgcggtaagtataaacgtgtcaggtacaaaggtatt
atctgtgaccgttgcggtgtggaagtaaccatgaaaagcgttcgtcgtgaacgcatgggg
catatttctctggcggttccagttgtacacacctggtttttccgttctgtccccagcaag
ataggtgcattgctcgacctttccaccaaggagctcgagcgtattatttattatgaagtt
tatgtcgttatcaaccctggggagccgggcgaaaagcaggggatcaaaaagctcgatcgt
ctgacggaagagcagtatttccagattataaccgaatacgaggataatcaggatcttgac
gataacgatccggcaaagttcgtcgccaagatgggcggtgaagcgattcacacgttgctc
aaggggcttgacctggattctcaggctgtcgagctgcgcaagatactccgtgaaagcggt
tcggagcagaaaaaagccgatgcgctcaaacgtttaaaagttgtcgaggcgttcaggaaa
agttacgaaccggttaagaagtcgaggaaaaagtcaacagggttatttcccgaagatgag
gcgccggaaccatatgtttatgagggtaacaaacccgagtacatggtcatggaggttatt
ccggtcattccgcctgagctgcgtcctcttgtgccgctggaaggtggccgattcgccaca
tccgacctcaacgatctttaccgcagggttatcatccgcaacaaccgtctgaagaaattg
atcgacattcgtgctcctgaagtcattttacgtaatgagaaaagaatgttgcaggaagcc
gttgatgcactgttcgataactcgcgcaaggccaatgctgttaaaaccggtgaatccaac
cggcctctgaaatccctttccgatgccttgaaaggaaagcagggtcgttttcgtcaaaac
ctgctcggtaagcgtgtcgattattccggcaggtcggttatcgttgtagggcctgagctg
aaattacatgagtgtggtttaccgaaaagcatggcgatcgaactgttccagccgtttgtc
ataaggcgtcttgtcgagcggggtattgcgaagtcggtaaaatcggccaagaagttgatc
gataaaaaagatccggttgtctgggacgttctggaaaaagttatcgacggtcggccagtg
ctccttaaccgtgcaccgaccctgcatcgccttggtattcaggcttttcagccggtcctg
atcgagggcaaggcaatacagatacatcctttggtttgtactgcgttcaacgctgacttc
gacggtgaccagatggcggtacacgtaccgctgtcacaggaagcacagctcgaggcgact
cttttgatgctttcgtcgcataacctcatccttccgcagtcgggtaagcccgttaccgtt
ccttcacaggatatggttcttggcatgtactacctcacgaaatccaggcttggagagaaa
ggtcagggacaactgttttacggtactgaagaggtcatgattgcctataatgaagaacgt
ataggtcttcatgcacttgtcttcgttaaatacagcggtaaaatagagcagaagttcgat
cctttgcgaatgctcgatatcattccggaagagaacgttgagcagaaagaatggctgaaa
aaggaaatcgaagaaagcagaatccttgtgacgaccgttggccgtgtgatcttcaaccag
tatgttccggaaaagatcggctttatcaacaaggttatcgataaaaaaggcgcaaaggag
cttatctccaaactttcaggagaagtgggcaatgttgcggcagcagagtttctcgataac
atcaaggaggttggtttccattatgccatgaaaggtggtctttccatcggccttgccgat
gcaatcattcctgaagccaagatccagcatatcaaaaaagcgacaagggaaagtaacaag
attgtcagagagtataacagaggtacgctgacggaaaacgaacggtataaccagattgtc
gatgtttggcagaaagtgacgaaccttgttgccgaggagtcgtatcagaagcttcgtaaa
gaccgtgcaggcttcaatccgttgttcatgatgcttgattccggtgctcgcggctcgaga
gaacaggttcgacagctaaccggtatgagagggcttattgcccgcccgcagaagtccatg
tcagggcagcccggtgagattatcgagaatcctattatttcgaaccttaaagaaggattg
accgttctcgagtattttgtctcgacgcatggtgcccgtaaaggtttgtccgatacatcg
cttaaaacagctgatgccggttacttgaccaggcgactgcacgatgttgcgcaggatgtc
atcgttaccgaggaggattgcggtacgacaaggggaattcatgttgaacgcggcattgaa
gaagaaacaggtggccaaatcaagttcagtgaaaaaattcggggccgtgttgcttcccgt
gacattatcgacacgcttgccgatgaaatcattgttccggcgggagggatcatcacggat
gaaattgccgatgccattcagaaaaatgtaggtgttacagaggctgatatccggtcggtg
ttgacctgtgaggccaagcaggggatatgttccaaatgttacggtaccaaccttgcggta
cacaagcttgtcgaaatcggtgaggctgtcggtgtcattgccgcacaatccattggcgaa
ccgggtacccagctcacccttcgtaccttccatcaggggggaacggcacagggcggtatt
gcagaaaccgaaaccaagtcttcctgcgaaggccaggtggagtttgagagcatcagaagt
gttgaacaggaaaccatcagtgaagacggtgtgcctgaaacccagatcttggttattcag
aaaaacggaaaaatcaacattgtcgatcctgattcaggaaaaatactgaaacgttatgag
gtgcctcacggtgcacatcttgcatccaaaaacggcgaccttgtcaaaaaggacgatgtt
cttttcagcagcgagcctaacagtacgcagattatcgccgaaatcgaggggcaggtaaag
ttcgtcgatattgaaaaaggggttacctacaaggaagaggttgatcctcagaccggttat
gtacagcatgtgattatcaactggcgtaccaagttacgggcttctgaaacaagggagcca
aggattttgattgtaagcgatgcaggagagatcctcaaaacctatcctgttccaatcaag
tcgaacctctttgtcgaggacggcagaagggttaaggttggtgatgtcatggccaaagta
ccgagaaaccttgaccgggtcggcggtgatattaccgcaggtcttccgaaagttaccgaa
cttttcgaggctcgtattccttcggatccggcgattgtatccgagattgacggttacgtc
agttttggcccacaacgcaggagcagtaaggagatcaaggttaaaaacgaatttggagag
gaaaagaattattatgtacaggttggtaaacatgttcttgccaatgaaggtgacgaagtc
aacgcaggagaaccccttaccgacggtgctgtatctccgcaggatattctgagaattcag
ggtccgaatgctgtacagcagtatttggtgaatgaaattcagaaggtataccagatcaac
gccggtgttgagatcaatgacaaacatcttgaagtgatcgttcgccagatgttgcagaag
gtgagggttgaagaaccgggagataccgaactgctgtcgggagatcttatcgatagaacc
gtgttcatcgaagccaacagggatgtcgccgaaaaagtacgggtgacagaacggggggat
gctccgccgagaattcaggaaggtcagctgtacaaaatgcgggatataaccaaacttaac
agggagcttcgcagaaacagcaaaaaattgattgctatcgagcccgcgttgcaagcaact
tctcatccggttctgcttggtattacaagtgctgccctgcagactgaaagcgttatttcc
gctgcatctttccaggaaaccacaaaggttcttactgatgctgcagtagccggtaaaatc
gacaatctggccgggttgaaagaaaacgtcatcgtcggtaagctcattcctgccggtacc
ggattgaaaaagtatcgtaagctgaaccttgcgtttcctgaaaacggtgaaggcagcacc
gctgcttttgagagtgaagacgccgatctggatggatcggttattgaagaagacgctacc
gagtaa
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