Pseudomonas aeruginosa RP73: M062_15925
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Entry
M062_15925 CDS
T02711
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prp
Pseudomonas aeruginosa RP73
Pathway
prp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M062_15925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prp03019
]
M062_15925
03009 Ribosome biogenesis [BR:
prp03009
]
M062_15925
Enzymes [BR:
prp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M062_15925
Messenger RNA biogenesis [BR:
prp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M062_15925
Ribosome biogenesis [BR:
prp03009
]
Prokaryotic type
rRNA processing factors
M062_15925
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGO40595
LinkDB
All DBs
Position
3418537..3421710
Genome browser
AA seq
1057 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQW
DLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALN
FIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEA
PVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNR
RRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREG
REERAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREER
QPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSG
ELEGSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDAP
TSEAVETQGADSEANADETADIEAPVTVSVVRDEADQSTLLVAQVTEEAPFASESVESRE
DAESAVQPATEAAEEVAAPVPVEVAAPSEPAATEEPTPAIAAVPANATGRALNDPREKRR
LQREAERLAREAAAAAEAAAQAAPAVEEIPAVASEEASAQEEPAAPQAEEITQADVPSQA
DEAQEAVQAEPEASGEDAADTEHAKKTEESETSRPHA
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgac
ggccaacgcctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaac
atctacaaaggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttc
ggcgccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaa
tcccccgaaggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggccgttacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgt
atcgaaggcgaagagcgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggcc
gacatgggcctgatcgtgcgcaccgccggcctcggccgcagcaccgaggaactgcagtgg
gacctcgactacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggc
gcgcccttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaac
ttcatccgccaggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgtt
ccgctgttcaatcgcttccagatcgagagccagatcgagaccgctttccagcgcgaagtg
aagctgccgtccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtc
cgcgaagccctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtc
tgcccgcgctgcaacggccagggcatcatccgcgacgtcgagtcgctgtcgctggccatc
ctgcgcctgatcgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtg
cccttccaggtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaa
ctgcgtacccgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttc
gaagtccagcgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaa
atggccaccgtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgc
caggaagcagcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagca
ccggtcgagccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtcc
ctggtcggcctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaag
ccggctgccgagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgc
cgccgcgatggccgcgatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgc
gcagaacgtcaaccgcgcgaagagcgcgccgaacgcccgaatcgcgaagagcgcagcgaa
cgccgccgcgaagagcgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggc
cgtgaagagcgcgccgagcggacgccccgcgaagaacgccagccgcgcgaaggccgcgaa
ggtcgcgaggaacgcagcgaacgccgccgcgaagagcgcgccgaacgcccggctcgcgaa
gagcgccaaccccgcgaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgc
cagccgcgcgaggatcgccaggctcgcgacgccgcggccctggaagccgaggcgctgccg
aacgacgagagcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgc
cgctcccgcggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggc
gagctggaaggcagcgaggcgaccgataacgccgccgcgccgctgaacaccgtcgcagcc
gccgctgctgccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagcc
ccggccactaccagcgaggctgccagcgaaaccacggcaagcgatgaaaccgacgcaccg
accagcgaagccgtcgaaacccagggcgcggacagcgaggccaatgccgacgaaaccgcc
gacatcgaagcgccggtgaccgtcagcgtggtccgggacgaagccgaccagagcaccctg
ctggtcgcgcaagtcactgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaa
gacgccgagagcgccgtgcaaccggcaacggaagcggccgaagaagttgccgctccggtg
cccgtcgaagtagcagcccctagcgagcccgcagccaccgaggagccgaccccggccatc
gcggcggtgccggccaacgcgactggccgtgccctcaacgacccacgggaaaaacgtcgc
ctgcaacgcgaagccgagcgtctggcacgcgaagccgcagcagcagccgaagcggcagct
caggccgctcccgccgtcgaggagatcccggctgtagcgagcgaggaagcgtcggcccag
gaggaacctgctgcaccccaggctgaagaaatcacccaggccgacgttccgtcccaggcg
gacgaagcccaggaagcggtacaggccgagcctgaagcttccggcgaagacgccgccgac
acggagcacgcgaaaaagaccgaggaaagcgaaacctcgcgcccgcatgcctga
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