Pseudomonas aeruginosa RP73: M062_16060
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Entry
M062_16060 CDS
T02711
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prp
Pseudomonas aeruginosa RP73
Pathway
prp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M062_16060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prp03400
]
M062_16060
Enzymes [BR:
prp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M062_16060
DNA repair and recombination proteins [BR:
prp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M062_16060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_30
DUF7267
Motif
Other DBs
NCBI-ProteinID:
AGO40620
LinkDB
All DBs
Position
3446508..3449960
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVSVLRLPSLPASAGKQHWGNLPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQEL
RFFAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLA
PTRFLLGSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSEL
PFRIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGFRGRFRERFDVD
YRRCPIYQDLASGLTPSGIEYYLPLFFEETATLFDYLPQDTQVFSLPGIEQAAEQFWNDV
RSRYEDRRVDPERPLLPPADVFLPVEDCFARLKNWPRVVASQEDVEPGVGRERFPALPLP
NLAIEAKAAEPLAALRRFIEEFPGRVLFCAESAGRREVLLELLARLKLRPEEVDGWPAFL
ASQARLAISIAPLDEGLLLDHPALALVAESPLFGQRVMQRRRREKTRDGGDAVIKNLTEL
REGAPVVHIDHGVGRYLGLITLEVDNQQAEFLMLQYAEDAKLYVPVANLHLIARYTGADD
ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFKDPQADYATFSAGF
PFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVP
TTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQED
VKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELVPEAR
IGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPEDYL
PDVHARLILYKRIANAPDEEGLRELQVEMIDRFGLLPDPAKNLMRLTLLKLQAEKLGILK
VDAGPQGGRIEFAADTQVDPLVLIKLIQGQPNRYKFEGATLFRFQVPMERPEERFNTLEA
LFERLTPQTT
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgtgtccgtactgcgtcttcccagcctgccggccagcgccggcaagcaacactgg
ggcaacctccccggtgccgcgctgagcctggctgtcgccgaggccgccagttccgccaag
cgcttcaccctgctgctgaccgccgacagccagaatgccgaacgcctggaacaggaactg
cggttcttcgcccccgacctgccggtattgcatttccccgattgggaaaccctgccctac
gacgtcttttcgccgcaccaggacatcatttcccagcgcatcgccgccctctaccagttg
ccgcagctcaagcacggcgtgctggtggtgccgatctccaccgccttgcaccgcctggcg
ccgacccgcttcctgctcggcagcagcctggtcctcgacgtcggccagaaactcgacgtc
gagcggatgcgcctgcgcctggaaggcgccggctaccgctgcgtcgacacggtctacgag
cacggcgagttcgccgtccgcggcgcgctgatcgacctgttcccgatgggcagcgagttg
cccttccgtatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggag
acccagcgctccatcgacaaggtcgagtcgatccgcctgctgccggcacgcgaattcccc
ctgaacaaggaagcggtcaccggcttccgcggccgcttccgcgagcgcttcgacgtcgac
taccggcgctgcccgatctaccaggacctcgccagcggtttgacaccctcgggaatcgag
tactacctgccgctgttcttcgaggaaaccgcgaccctcttcgactacctgccgcaagac
acccaggtgttctccctgcccggcatcgaacaggccgcggagcagttctggaatgacgta
cgcagccgctacgaggaccgccgggtcgatccggaacggccattgctgccgccggcggat
gtgttccttccggtggaagactgcttcgcccggctgaagaactggccacgggtggtcgcc
agccaggaggacgtcgagccgggcgtcgggcgcgagcgcttcccggccctgccgctgccg
aacctggcgatcgaagccaaggccgccgagccgctggccgcgctgcgccggttcatcgag
gagttccccggccgcgtactgttctgcgccgaatcggccggacgccgggaagtcctgctg
gagctgctggcccgactgaagctgcgccccgaggaagtcgacggctggccggccttcctc
gccagccaggcacgcctggcgatcagcatcgcgccgctggacgagggcctgctgctggac
catccggccctcgccctggtcgccgaaagcccgctgttcggccagcgcgtcatgcagcgc
cggcgccgggaaaagacccgcgacggcggcgacgcggtgatcaagaacctcaccgagctg
cgcgaaggcgcgccggtggtgcacatcgaccatggcgtcggccgctacctgggcctgatc
accctcgaggtggacaaccagcaggcggaattcctcatgctgcaatacgccgaggacgcc
aagctctacgtgccggtcgccaacctgcacctgatcgcccgctacaccggcgccgacgac
gccctggcgccgttgcaccggctcggctcggaaacctggcagaaggccaagcgcaaggcc
gccgagcaggtccgcgacgtcgccgccgagctgctcgacatctacgcccgccgcgccgcc
cgcgaaggcttcgcgttcaaggatccgcaggccgactacgcgaccttctcggccggcttc
ccgttcgaggagacgccggaccagcaaagcgccatcgaggcggtggtcgccgatatgctc
gcgcccaggccaatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtg
gcgatgcgcgcggcgttcgtcgccgtgcatagcggcaagcaggtggcggtgctggtgccc
accaccctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccg
gtgagcgtcgaggtgatgagccgcttcaagagcgccaaggaagtcgagaacgctgcgcgg
ctactggccgaaggcaagatcgacatcctcatcgggacccacaagctgctccaggaagac
gtgaagttcgccaacctggggttggtcgtgatcgacgaggaacaccgcttcggggtgcgc
cagaaggagcagctcaaggccctgcgcagcgaagtggacatcctcaccctcaccgccacg
ccgatcccgcggaccctgaacatggccgtctccggcatgcgcgacctgtccatcatcgcc
acgccgccggcgcgccgcctgtcggtgcgcaccttcgtcatggagcagcagaacgcggta
atcaaggaagcgctgctccgcgaactgctgcgcggcggccaggtgtactacctgcacaac
gaagtgaagaccatcgagaagtgcgcccgcgacctcgccgaactggtcccggaggcgcgc
atcggcatcggccacggacagatgcacgagcgcgagctggaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtg
cccagcgccaacaccatcctcatcgagcgcgccgacaagttcggcctggcccagttgcac
cagttgcgcggccgcgtcggtcgcagccaccaccaggcctacgcctacctgctgacaccg
ccgcgccgtcagatgaccccggacgccgagaaacgcctggaagccatcgccaacgcccag
gacctgggcgccggcttcgtcctcgccacccacgacctggagatccgcggcgccggcgag
ttgctcggcgacggccagagcgggcagatccaggcggtcggcttcaccctctacatggaa
atgctcgaacgggcggtgaaggccatccgcaagggcgagcaaccgaacctcgagcagcca
ctgggcggcgggccggaggtcaacctgcgggtgcctgcgctgatccccgaggattacctg
cccgacgtgcatgcccggctgatcctctacaagcgcatcgccaacgcccctgacgaggaa
ggtttgcgcgagttgcaggtggagatgatcgaccgcttcgggctcctgcccgatccggcg
aagaacctgatgcgcctgacccttctgaaactgcaggcggaaaaacttggaatactcaag
gtcgatgccggaccgcagggcggtcgtatagaattcgccgccgatacccaggtcgacccg
ctggtattgatcaagctgatccagggccaaccgaaccgctacaagttcgaaggcgcaacc
ctgttccgcttccaggtgcccatggaacgaccggaagaacgcttcaataccctggaggcg
ctgttcgagcgcctgacaccgcaaaccacctaa
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