Providencia huaxiensis: CYG50_13480
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Entry
CYG50_13480 CDS
T05654
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prq
Providencia huaxiensis
Brite
KEGG Orthology (KO) [BR:
prq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prq03016
]
CYG50_13480
Enzymes [BR:
prq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CYG50_13480
Transfer RNA biogenesis [BR:
prq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CYG50_13480
Prokaryotic type
tRNA splicing ligases
CYG50_13480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AXH62948
UniProt:
A0A345LXV8
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All DBs
Position
complement(4405292..4406518)
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AA seq
408 aa
AA seq
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MINNKFNELIQENGVPVKMWTNGVPVDPKAVTQLQNTAKMPFIFKHLAVMPDVHVGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLTASDLPDSLQNIRFAIEAAVPHGRTTHRH
GRDKGAWHRTPDIVDSHWAHLDEEFKRICDKYPKLRQTNHYNHLGTLGTGNHFIELCLDE
QDRVWVMLHSGSRGVGNAIGNLFITLAQKDMQQHIANLPDRDLAYFEEGSVHFNDYMEAV
GWAQDFARHNREVMMHRVLEALSREIPKPFTTQQEAVNCHHNYVQKEQHFGEEVLVTRKG
AVSARKGQMGIIPGSMGAKSFIVRGLGDEESFCSCSHGAGRVMSRTEAKKRFSVSDQKMA
TAHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgataaataataaattcaacgaattaattcaagaaaatggcgtgcctgtaaaaatgtgg
accaacggtgtacccgttgatcctaaagcggtaacacaactacaaaacaccgcaaaaatg
ccgtttatttttaagcacctagccgtaatgcctgatgtgcatgtcgggaaaggttcaacc
attgggagcgtgattccaaccaaaggcgcgattatccctgcggcagtgggggtggatatt
ggttgtggaatgattgccgtgcgaacgtctttaacggcatctgatttacctgatagcttg
caaaatatccgttttgctatcgaagctgcagtaccgcacggtcgaaccacgcatcgacat
ggacgtgataagggggcttggcatcgtacaccagatattgttgatagccactgggcgcat
ttggatgaagagttcaaacgtatctgtgataaatacccaaaactgcgtcagacgaaccat
tacaaccacttaggaacattgggaacgggaaatcactttattgagctgtgtttggatgaa
caagaccgtgtatgggtaatgttacatagcgggtcgcgaggtgtgggaaacgcgattggt
aacttgtttatcacgttggcgcaaaaagatatgcaacagcatatcgctaatttgccggat
agagatctcgcttattttgaagaaggtagcgtgcactttaatgactatatggaagcggta
ggttgggcgcaggactttgctcgccataaccgtgaagtgatgatgcaccgcgtattggaa
gcgctatcgcgtgaaattccaaaaccatttacgacccaacaagaggccgtaaattgtcac
cataattatgtgcaaaaagagcagcactttggtgaagaagtactggtaacccgaaaaggc
gcggtgtcagcgcgaaaaggccaaatggggatcataccaggatctatgggagcaaaaagt
tttatcgtgcgcggtttaggtgatgaagaaagcttttgttcctgtagccacggtgcagga
cgcgtaatgagccgaacagaggcgaaaaaacgtttctcagtcagcgaccaaaaaatggct
accgcccatgtggaatgccgaaaagacagtgacgtgattgacgaaataccgatggcgtac
aaagacatcgacgcagttatggcagctcaatcatcattagtagaaattgttcatacccta
cgccaagtggtgtgtgtgaaggggtaa
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