Providencia huaxiensis: CYG50_14275
Help
Entry
CYG50_14275 CDS
T05654
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
prq
Providencia huaxiensis
Pathway
prq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYG50_14275 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prq03021
]
CYG50_14275 (rpoC)
03400 DNA repair and recombination proteins [BR:
prq03400
]
CYG50_14275 (rpoC)
Enzymes [BR:
prq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYG50_14275 (rpoC)
Transcription machinery [BR:
prq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CYG50_14275 (rpoC)
DNA repair and recombination proteins [BR:
prq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CYG50_14275 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
AXH63092
LinkDB
All DBs
Position
4211556..4215779
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLIKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERAQILTEEQYLDALEEFGDEFDAKM
GAEAIQGLLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLAGPKEAERVYRSG
HASLHARVKVRITEEVKDSEGNITINTGLVDTTVGRAILWMIVPKGLPYALVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEAVINRDGVEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDILIPGTADILVPRNTLLHEKLCDLLEANSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNTGTLKL
VNAKFVTNTEGKLVITSRNTELRLVDEFGRTKESYKVPYGAHLTKGDGDAVTGGETVANW
DPHTMPVVSEVSGFISFSDMLDGQTMTRQTDELTGLSSIVVLDTAERTSGGKDLRPALRV
IDAKGNDVLIPNTDMPTQYFLPGKAIVQLDDGVAINAGDTLARIPQESVGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIADAGSSEFLEGEQVEYSRVKVSNRKLETEGKIPANFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQDRIRRRHLNDVVE
APQVSADEATANLAELLNAGFSSDNQN
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttaataaagtttctgaaagcgcaaaccaagaccgaagagtttgatgctatc
aagattgctctggcatcacctgatatgatccgttcatggtcattcggtgaagttaaaaag
ccagaaaccattaactaccgtacgttcaagcctgagcgtgatggtcttttctgtgcgcgt
attttcgggccagtaaaagactacgaatgtctgtgcggtaagtacaaacgtttaaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagttacacagaccaaagtccgtcgtgag
cgcatggggcacattgaacttgcttctccgactgcacatatttggttcttaaaatcactg
ccatcccgtatcggtttactgctcgatatgccactgcgtgatatcgaacgcgttctgtac
tttgaatcatatgttgttgttgaaggcggtatgactagccttgagcgtgcacagattctg
acagaagagcaatatttagatgcgttggaagagttcggtgacgaatttgatgcgaaaatg
ggtgcggaagcaatccaaggcctgctgaaaaacctcgatcttgagaacgagtgtgaaacc
ctgcgcgaagagttaaacgaaactaactctgaaactaagcgtaagaagctgaccaaacgt
atcaaactgctggaagcatttatccaatctggtaacaaaccagagtggatgatcttaaac
gtgctgccagtattaccaccggatctgcgtccattagttccactcgatggtggtcgtttc
gcaacatcagatctgaacgatctgtatcgtcgcgtaatcaaccgtaataaccgtctgaaa
cgtcttctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgttgcaa
gaagccgttgacgccctgttagataacggtcgtcgtggtcgtgcaatcacaggttctaac
aaacgtcctctgaaatctttggcagatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactactcaggtcgttctgttatcaccgtgggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagttattcaaaccattc
atctatggcaaattagaattacgtggtctggctacaaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagcggttgtttgggatatcttggatgaagtcatccgtgaacaccca
gtcatgctgaaccgtgcaccaacacttcaccgtctgggtatccaagctttcgaacctatt
cttatcgaaggtaaagctatccaattgcacccactcgtttgtgcggcatataacgccgac
ttcgatggagaccaaatggcggtacacgttcctctgactctggaagctcagttagaagca
cgtgcgttgatgatgtcaaccaacaacatcctgtcacctgcaagtggtgagccgatcatc
gttccttctcaggacgttgtattgggtctttactacatgacacgtgactgcgtaaacgcg
aaaggcgagggcatggtattagccggtcctaaagaagctgagcgtgtttaccgttcaggt
catgcgtcactgcatgcccgcgttaaagtccgtatcactgaagaagtaaaagattcggaa
ggtaacattacaatcaacactggtttagttgacaccactgttggtcgtgcaattttatgg
atgatcgtaccgaaaggtctgccttatgctctggtaaaccaagcgttaggtaagaaagct
atctccaaaatgctgaacacctgttaccgtgttctgggcctgaagcctactgttattttt
gctgaccaaatcatgtataccggttttgcctatgcggcacgttctggtgcatcagttggt
atcgacgatatggttattccagagaaaaaagctgggatcatcgccgaagcagaagctgaa
gttgcagaaattcaggaacagttccagtctggtctggtaacagcaggcgaacgttacaac
aaagttatcgatatctgggcagcagcaaacgaacgtgttgctaaagcgatgatggaaaac
ttgtcgactgaagcggttattaaccgtgatggcgtcgaagaacaacaagtttctttcaac
agtatctttatgatggccgactccggtgctcgtggttctgcagctcagattcgtcagcta
gcaggtatgcgtggtctgatggctaagccagatggctccatcatcgaaacaccaatcacg
gcaaacttccgtgaaggtctgaacgttcttcagtactttatctctacgcacggtgcgcgt
aaaggtcttgccgataccgcattgaaaacagcgaactccggttatttgactcgtcgttta
gttgacgttgcacaggacttggttgtgactgaagacgactgtggaactcatgaaggtatc
ctgatgactccggttatcgagggtggcgacgttaaagaaccactgcgtgagcgtgtattg
ggtcgtgtgactgcagaagatatcctgatcccaggaacggcagacattctggttccacgt
aatacattactgcacgaaaaactgtgtgacctgttagaagctaactccgtcgacagcgtt
aaagttcgttcagttgtaagttgtgaaactgacttcggtgtgtgtgctcactgttatggt
cgtgaccttgctcgtggtcatatcatcaacaaaggtgaagctatcggggttatcgcggca
cagtcaatcggtgagccgggtacacagttaacgatgcgtacgttccacatcgggggtgcg
gcatctcgtgcggcggcagaatctagcattcaagtccgtaacacaggtactctgaaactg
gttaacgcgaaattcgttactaacacagaaggcaaactggttattacttcacgtaatact
gaattgcgtctggttgatgaatttggccgtacgaaagaaagctataaagtcccttacggt
gcgcacttgacgaaaggcgatggcgatgcagtaacgggcggtgaaactgttgcgaactgg
gatccacataccatgccagtcgtcagtgaagtgtctggtttcatcagcttctctgacatg
cttgatggtcaaacaatgacacgtcagactgatgaattaaccggtctgtcttcaatcgtt
gttctggatactgcggaacgtaccagtggtggtaaagacctacgtcctgcattgcgtgta
attgacgcaaaaggtaacgatgttcttatccctaacacagacatgccaactcagtacttc
ttaccgggtaaagcaattgttcagttagacgatggcgttgctatcaatgcgggtgatacc
ttagcgcgtattccacaagaatctgtgggtactaaagatatcacgggtggtctgccacgc
gtagctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcttggctgaaatcagc
ggtattatctcgtttggtaaagaaaccaaagggaaacgtcgtctggttatcacaccatta
gatggtagcgatccgtacgaagagatgatccctaaatggcgtcagctcaacgtgttcgaa
ggtgagatcgttgaacgcggtgacgtagtttcggatggtccagaatctccacacgatatt
ctgcgtctgcgtggtgtccatgctgttacgcgttatatcacgaacgaggttcaggaagtt
taccgcttacaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaagtcactatcgcggatgcaggaagctctgaattcctcgaaggtgaacaagtc
gagtactcacgtgttaaagtttcgaatcgtaaactggaaactgaaggtaaaattccagct
aactttgctcgtgacctgttgggtattactaaggcatctctggcaacagaatcctttatc
tcagcagcatcgttccaagaaacgacgcgcgtactgactgaagctgcggttgctggtaaa
cgtgatgaattacgtggtctgaaagaaaacgttattgttggacgtctgatcccagcaggt
actggttttgcgtatcaccaagaccgtatccgtcgccgtcatctgaacgatgttgtggaa
gcaccacaagtgagtgcagatgaagcaacagcgaacttagctgagctgttaaatgcaggt
tttagcagtgacaatcagaactaa
DBGET
integrated database retrieval system
