Pseudoalteromonas rubra: AT705_03320
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Entry
AT705_03320 CDS
T04179
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
prr
Pseudoalteromonas rubra
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prr03032
]
AT705_03320 (ihfB)
03036 Chromosome and associated proteins [BR:
prr03036
]
AT705_03320 (ihfB)
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_03320 (ihfB)
DNA replication proteins [BR:
prr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
AT705_03320 (ihfB)
Chromosome and associated proteins [BR:
prr03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
AT705_03320 (ihfB)
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
AT705_03320 (ihfB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
PqqD
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
ALU42050
UniProt:
A0A0L0EQ48
LinkDB
All DBs
Position
1:complement(733950..734240)
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AA seq
96 aa
AA seq
DB search
MTKSELIEKLAEQHIHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRSPRT
GRNPKTGETVELDGKYVPHFKPGKELRDRVNASLEN
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtcagaactaatcgaaaaacttgctgagcaacatattcacgtcccagtcaaa
gacgttgagaatgcggtaaaagagattttagagcagatggcaggttcactttcaagctca
gatcgtatcgaaatccgcggctttggcagcttttctctccactatcgctcacctcgtact
ggtcgtaacccgaaaacaggtgaaaccgttgagttggatgggaagtacgtacctcacttt
aagcctggtaaagagcttcgtgaccgcgtgaacgccagtctagaaaactga
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