Pseudoalteromonas rubra: AT705_05525
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Entry
AT705_05525 CDS
T04179
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT705_05525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prr03019
]
AT705_05525
03009 Ribosome biogenesis [BR:
prr03009
]
AT705_05525
Enzymes [BR:
prr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AT705_05525
Messenger RNA biogenesis [BR:
prr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AT705_05525
Ribosome biogenesis [BR:
prr03009
]
Prokaryotic type
rRNA processing factors
AT705_05525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ALU42456
UniProt:
A0A0U3HNE5
LinkDB
All DBs
Position
1:1243077..1246484
Genome browser
AA seq
1135 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAKTYFPSGYTFNGRPNIKDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSRLNLPKGMGLIVRTAGVGKSFEEL
EYDLKALLVHWEAIQNAADSGKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKARVFEEA
KAHIERFRPDFINRVKLYQNDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAVRADRARVQIGKISRFGLLEMSRQRLRPSLGEASQHTCPRCDGQGTIRSNESIAL
SILRLIEEEAIKENTAQVNAQVPVKVGSYLLNEKRRAVQRIEKRHNCDVVIIPNQHMETP
HYDVVRLRKDDVPESVSYDQVVTPEVEVVAAPIATPVVKEEPVLKGVAMPTAPAPAPQPA
QETKQPQTQKKEEEEAGLLSRIGKWLKGLFGTEEEQKEEEQPKQQPRQRQDNRRRNQQRR
KNRNRNDRRNDGRNDGRNDERNDNRKAEQDNSDNKARKEDHNDNQERSEGRNKRRRQNQR
RRNDSDKAKQNTEQSSEQKQDNAEQATQEKANKPRRQRRNLKKKVRIDGESKATQTANEA
VEAEAVNDSTQKPEQAQQPAAEQKAETVAKEVTQDAVEAQVAASGVPADEEAKLTQNQAQ
DSQKGEETAEEDKEQREQPRTRSRRSPRHLRAAGQKRKRTENKDATPAFVPVADQAAAEF
EAELNATAEQTEEAPVAEQAVEAPAAEQAVEAPAAEQAVEAPAAEQAVEAPAAEQAVEAP
AAEQAVEAPAAEQVAEAPAAEQVAEAPAAEQVAEAPAAEQAVEAPAVEPVVEAPAAEPVV
EAPAAAEPVVEAPAAEPIVEAPAAEPIVEAPAAEPIVEAPAAEPIVEAPAAEPVVEAPAA
EPVVEAPAAEPVVEAPVAEQAVEAPAAKQVAETAVETTPLVKSTESAVSVRVRYQHVAEA
PMTKAAADESADIAITVLAMPDSMREKVSDSGQGSGSKSPTARASSAMASPASYE
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgatcaatgcgacgcagcaagaagaaatgcgcgttgcactggttgac
ggccagcgtctgtacgatctcgatatcgaaagccctggtcatgaacaaaaaaaagccaac
atttacaaaggtaaaatcactcgtatagaaccttccctagaagccgcttttgtcgattat
ggtgctgagcgccacggtttcctccctctcaaagaaattgccaaaacatacttcccgtca
ggctacaccttcaatggtcgtccaaacatcaaagatgtgatcaaagaaggccaggaagtc
attgttcaggtcgataaagaggaacgaggccaaaaaggggctgcgctaacgactttcatc
agtgtcgctggtagctacttagtgctgatgccaaataatccacgtgccggcggcatttct
cgccgcatcgagggggatgagcgcatcgagctgaaagaagcgctgagccgtctgaacctg
ccaaaaggtatgggtctaatcgtgcgtacagcaggtgttggcaaatcgtttgaagagtta
gagtatgaccttaaagcgctgcttgtgcactgggaagcgatccaaaatgcagcagacagc
ggtaaggcaccattcttaattcatcaggaaagtaacgtcattttccgcgctattcgtgat
tacttacgtcgcgatatcggtgagattctgattgataaagcacgtgtatttgaagaagcg
aaagcccatatcgagcgattcagacctgacttcattaaccgcgttaagctatatcaaaat
gatgttccgttatttacacactatcaaatcgaaagccagatagaatcggctttccagcgt
gaggtacgtctgccttctggtggttctattgttatagacccaacggaagcacttacctct
atcgatatcaactcgtcaaaagcaaccaaaggcggtgatatcgaagaaacggcgttaaat
accaacttagaagctgcagacgaaattgcccgccaattacgtttacgtgacttgggcggc
ctgatagtcatcgatttcattgatatgacgcctcctcgtcaccaacgtgaagtggaaaac
cgtctgaaagacgccgtacgcgcagatcgagctcgagtgcagataggtaagatttcacgt
tttggcctgctggaaatgtctcgtcagcgtctgcgtccgtcattaggtgaagccagccag
catacatgtccacgctgtgatggtcagggaaccatacgttcaaacgaatcgattgctttg
tccatcttacgtctgatcgaagaagaagccatcaaagaaaacaccgctcaggttaatgca
caagtaccggtgaaagtgggctcttacctgcttaacgaaaagcgcagggctgtacagcgc
atcgaaaaacgccacaactgtgatgttgtgatcatccctaaccagcacatggaaacgcct
cactatgacgttgtccgtctgcgcaaagatgatgtgccagaaagcgtcagctatgatcag
gttgtaacgcctgaagttgaagttgtcgccgcaccgattgctacaccagtggttaaagaa
gaaccggttctgaaaggcgtagccatgccaacagctccagcaccagcaccacaaccagcg
caagagacaaaacaacctcagacacaaaagaaagaggaagaggaagcgggcctgctaagc
cgcattggcaaatggctgaaaggtctgtttggtactgaagaagagcaaaaagaggaagag
cagccaaagcagcaacctcgccaacgtcaggacaaccgccgtcgcaatcaacaacgtcgt
aaaaatcgcaaccgcaatgaccgccgtaacgatggtcgtaatgacggccgcaacgatgaa
cgcaatgacaatcgtaaggctgagcaagacaacagcgataataaggcacgcaaagaagat
cataacgacaaccaggaacgcagcgaaggtcgtaacaaacgccgtcgtcaaaaccagcgt
cgtcgtaatgattctgataaagcgaagcaaaatacagagcaaagttccgaacagaagcag
gacaatgcagaacaagcaacgcaggaaaaagcgaacaaacctcgtcgccaacgtcgtaac
ttgaagaaaaaagtgcgtattgatggagagtcaaaagcaacccaaaccgctaatgaagca
gttgaggctgaagctgtaaatgattcaacgcaaaaacctgaacaagcacaacagccagct
gcggaacaaaaagcagaaactgtcgcaaaagaagtgacccaagacgcagtggaagctcaa
gtagcagcgtctggtgtccctgctgatgaggaggcaaaactcactcagaaccaagctcag
gatagccaaaaaggtgaagaaacagcggaagaagacaaagagcaacgcgaacagccacgc
actcgctctcgtcgctctccacgtcaccttagagctgctggccagaaacgcaaacgtact
gagaataaagatgcaacacctgcatttgtaccagtcgcggatcaggctgctgcggagttt
gaagctgagcttaatgccacggctgagcaaaccgaggaagcgcctgttgctgagcaagct
gtagaagcacctgctgctgagcaagctgtagaagcacctgctgctgagcaagccgtagaa
gcacctgctgctgagcaagccgtagaagcacctgctgctgagcaagccgtagaagcacct
gctgctgagcaagccgtagaagcacctgctgctgagcaagttgcagaagcacctgctgct
gaacaagttgcagaagcacctgctgctgaacaagttgcagaagcacctgctgctgagcaa
gccgtagaagcacctgctgttgaaccagtcgttgaagcgcctgctgctgagcctgtcgtt
gaagcgcctgctgctgctgagcctgtcgttgaagcgcctgctgctgagcctatcgttgaa
gcgcctgctgctgagcctatcgttgaagcgcctgctgctgagcctatcgttgaagcgcct
gctgctgagcctatcgttgaagcgcctgctgctgagcctgtcgttgaagcgcctgctgct
gagcctgtcgttgaagcgcctgctgctgagcctgtcgttgaagcgcctgtcgctgagcaa
gccgttgaagcgcctgctgctaaacaagttgcagagacagctgttgaaaccactccacta
gtgaaatccactgaatcagcggtatcggtccgtgtgcgttatcaacatgttgctgaagca
ccaatgacaaaagctgctgctgatgaaagcgctgatatcgccattaccgttctggcaatg
ccagactccatgcgcgagaaagtgagcgacagtggacagggctctggctctaagtctccg
acagcaagagcaagctcagctatggcatcaccagccagttacgagtag
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integrated database retrieval system
