Pseudoalteromonas rubra: AT705_05625
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Entry
AT705_05625 CDS
T04179
Name
(GenBank) exonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AT705_05625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_05625
Enzymes [BR:
prr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AT705_05625
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AT705_05625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ALU42474
UniProt:
A0A0U3GCF6
LinkDB
All DBs
Position
1:complement(1266361..1269900)
Genome browser
AA seq
1179 aa
AA seq
DB search
MRRLDPQTMPLSGHNLIEASAGTGKTYTITGLYLRYLLGLIDTETQTTPLSVEQILVVTF
TDAATQEIKDRVRKRIVQARDALLGSECNDTLIIELLAQVADQESAYHLLDAAAKSMDEA
AIFTIHGFCQRMLKQHAFESNLSFNLEFILDDSELFNAAVEDHWRRFVYPLDSDKTELVL
SHFSHPQALAKRLYPLLKRGDARLQPELDLAVVLAQRAEYQSRAGKFKQQLLNSDFFQVL
RDSGIAKNKAPGRPANIQALIDYCMGDGWYFEFGTSKHSFALWGEAQLGDPKNYTKTGKP
VVHPALGWFDEMAQLHKSVARGLPIALLQHALGEVRALMAQAKLEHSLISPDDLLQNLHQ
ALHGAQGEALAEKIAQLYPVAMIDEFQDTDPIQFGIFSRVYGTDSSCGLTMIGDPKQAIY
GFRGADIFTYIGAKHQVDEARQFTLDKNYRSAKRVVAAVNAIFTAQADSFIFNRDIPFIE
VEAAGKDADNTFTLDGVEPAALQFNVLMDDDSPVTTKATAYPLLAQGFAAQIAQILTQAQ
QGRACIGQRPVLAADICVLVRDRGEAGVIKHALQAAGVSSVYLARDSVFSQPVAVAVWQL
LHVVHGSYDEAALRGVLAGPLFALSEQQIFALRTQEGQWQRYLMQFAHLKQLWYQQGAMA
TLESLLVDNQLVRLWQQAGFEVERWLTDYRHLAELLQHKQIELEGTQRVMRWLQSQCANP
SYEGTQLRLESDADLVKIVTMHASKGLEYPLVYLPFASAYREASETIYHDNGELVLDLDG
DDSAQQSANRERLAEDIRLLYVALTRAIHFCSLGLYNLPLGRSKKPGIQQCALGHVLFGN
DKIIEATQWHEQLRSLCSGHEGMVYQSLQVVPCVYQPEQTESLQRLQSRAVEVVIEQNWR
MTSFSQLSYHETSAERPVGAQDENHKIDLPEPNVIKRYTPYTFVKGARAGSCLHEIFEQV
DFTAPHAPTRPDKLTLAEATQTCLEKYHLDIVWQETLEHWIEGCLHAPLMPSSDLTLGQL
SVSDCLVEMEFQLPLKRLSYTRLNKLVAQITGVPSHLRFDEVQGMLKGFIDLIFVWQGRY
FILDYKSNYLGDTAADYQADNLALAMSSHQYHLQYLIYSVALHRLLKHRLADYNPQQHLG
GVYYLFLRALPDGAGCFFTQLDESTLLQLDALFDAGEQK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagacggcttgatccccaaaccatgcctctgtcgggccataacctgattgaggccagt
gccggcactggcaaaacttacaccatcacagggttgtatttgcgttacttactggggtta
attgataccgagactcaaaccaccccacttagtgttgagcaaatcctggtggtgacgttt
accgatgcagccacccaggagatcaaagatcgggtacgcaaacggatcgtacaggcgcgg
gatgctttgttgggtagtgaatgcaatgacacgctgatcatcgaattgctggcacaagtg
gctgatcaggaatctgcgtatcacttactagatgctgccgctaagtccatggatgaagcg
gccattttcaccattcatggcttttgccagcgcatgctaaagcagcatgcatttgaatct
aacctcagctttaatctggaattcattctggatgacagcgagttgtttaacgcggctgtg
gaggatcactggcggcgctttgtttacccgttagactcagacaaaactgagctggtttta
tcgcatttctctcatccgcaggcgctggcaaaacgcctctatcccttgcttaagcgcggt
gacgctcgattacagccagaactggatttggcagttgtgctggcgcagcgggccgaatat
cagagccgcgcaggtaagtttaaacagcaactgttaaactcagacttttttcaggtgctg
cgcgattccggtattgcgaagaataaagcgcccgggcgacctgccaatatacaggcgtta
atcgactactgtatgggggatggctggtattttgagtttggtaccagtaaacattccttt
gctttatggggagaggcgcagttaggcgatccgaagaactacactaaaacaggtaaaccg
gttgtacatccggcgctgggttggtttgatgaaatggcgcagttacataagagtgtcgcc
aggggactgcctattgcattgttacaacatgcactgggtgaagtgcgtgctctgatggcg
caagctaagctcgaacacagcctgatctcgcccgatgacctgctacagaatttacaccag
gcattgcatggcgcacaaggtgaggcgctggcagagaaaattgcacagctttatccggtc
gccatgattgatgagtttcaggatacagatccgatccagtttggcatattttcacgtgtt
tatggcactgacagcagttgcggtctgaccatgataggggatccgaaacaggccatttat
ggcttccggggggcggacatcttcacctatatcggtgccaaacatcaggtcgacgaagcc
cggcaatttacattggataagaactatcgttcagccaagcgggtagttgctgccgtgaat
gcaatttttacagcgcaggcagatagttttatattcaatcgcgacataccttttattgaa
gttgaggcggcaggtaaagacgccgacaatacgtttactctggatggtgttgaacctgcg
gccctgcaattcaatgtactcatggacgacgattcgcccgttacgaccaaggccactgcc
tacccactgctagcgcaggggtttgccgcacagattgcgcagatcctcactcaggctcag
caagggcgtgcttgtataggtcagcgtccggtgctggcagcagatatttgtgtactggtc
cgtgacaggggagaagcgggcgttattaaacatgctttacaggcggctggtgtgagcagc
gtatacctggcccgggacagtgttttttcacagcccgtggccgttgctgtgtggcagtta
ttacacgtggtgcatggcagttatgatgaggcggctttgcgtggcgtactggccgggcct
ttgtttgcgttgagtgaacagcaaatttttgcactgcgtacccaggaagggcaatggcag
cgttatctgatgcagtttgcccacttgaaacagctttggtatcaacagggagccatggcc
actttggagtctttactggtagacaaccaattagtcagactgtggcagcaagcaggcttt
gaagtagagcgttggctgactgattaccgccacctggccgagttgttgcaacataaacaa
atcgaacttgaaggtacgcagcgggtcatgcgttggttacaatctcagtgtgctaatccg
agctacgagggcactcagctgcgtctggagagtgatgccgatctggttaaaattgtcacc
atgcatgcgtctaaagggttggagtaccccctggtttacctgccttttgccagtgcctac
cgggaggccagcgaaacgatttaccatgacaatggagagttggtgctggatctggatggc
gacgatagcgcacagcaaagcgctaatcgggaacgtcttgcagaggatattcggttgctt
tatgtggcattaacgcgggcgattcatttttgcagcctgggtttgtataacttgccactg
gggcgcagcaaaaaaccagggatccaacagtgtgcactggggcacgtgttgtttggcaat
gataaaattattgaagctacacagtggcatgaacagcttcgcagcttatgttcaggccat
gaggggatggtttatcaatcattgcaggttgtaccttgtgtatatcagccagagcagaca
gagtcgcttcagcgtttgcagagtcgagccgtcgaagtggtgattgaacaaaactggaga
atgaccagctttagtcagctgagttatcacgagactagtgctgagcggcctgtgggggcg
caagatgaaaatcacaaaatagatttacctgaacccaatgtgatcaagcgttatacacct
tacacttttgttaaaggcgcccgggcggggagctgtttacacgaaattttcgagcaggtt
gatttcacggcgccacacgcacccacccggccagacaagttgactctggctgaggcaact
cagacttgcctggagaaatatcatctggatattgtctggcaggagacacttgagcactgg
attgaggggtgtttacatgcccccttaatgccttcatcagatctgacactgggtcagttg
tcagtatctgactgtctggttgaaatggagtttcagttacccctgaagcgtttgtcctat
acccggctcaacaagttggttgcgcaaattaccggtgtacccagccacctacgttttgat
gaggtgcagggcatgctaaaaggctttatcgatctgatttttgtctggcagggacgatat
tttatcctcgattataaatcaaattatttgggcgacacggcggcagactaccaggccgac
aatctggctctggcgatgagctcgcaccagtaccatcttcaatatctgatttattctgtg
gccttgcatcgactattaaaacaccggctcgcagattacaaccctcagcagcacctcggc
ggcgtgtattatttgtttttgcgtgcgttaccggacggtgccggctgcttctttacgcaa
ctggatgaaagcacgttattacaactggacgccttatttgatgcgggagaacaaaaatga
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