Pseudoalteromonas rubra: AT705_06450
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Entry
AT705_06450 CDS
T04179
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT705_06450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prr03019
]
AT705_06450
03009 Ribosome biogenesis [BR:
prr03009
]
AT705_06450
Enzymes [BR:
prr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT705_06450
Messenger RNA biogenesis [BR:
prr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT705_06450
Ribosome biogenesis [BR:
prr03009
]
Prokaryotic type
rRNA helicases
AT705_06450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALU42624
UniProt:
A0A0U3I4J2
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All DBs
Position
1:1433107..1434942
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AA seq
611 aa
AA seq
DB search
MSEPVTFESLDLSPAILKAVEELGYQSPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNVDASVKQPQILVLTPTRELALQVAEAFNQYAKYTKGVEVLALYGGQSYGVQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSDLKALVLDEADEMLRMGFIDDVESIMEKTPVEK
QTCLFSATMPKQIQSICSKYLDNAEQVKITPRNSTVDTIEQVYWRATTHKNKAIVRFLEA
EDYDASIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGLLDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRKGKAILFVKGNERYLLRNIMR
HTRSDIEQVELPNAKVVEQKRIEALQGKLSLALDHKDIEFFSEVAQGMAEKLELTQTELS
AALLCLAQQQSPLKVQEIQVQRERRERDGNRDGNRERRGERGERKGNARRNTGPMDTYRI
EVGREHGVQVKNIVGAIANEADISSKFIGEIRLFDEHSTVQLPQDMPADTLSHFQSVYIC
QRPMKMTKSTHPADQGNGGERRGGERRSGGRDERRFEGRNEGRGDRKRSFKDPRGDKRDN
RRKERGEISFS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctttagatctttctcctgcaattttgaaggcagtc
gaagagctgggatatcaatcaccttctgagatccaggctcaatgtataccgttattgcta
gaaagaaaggacgtgctgggactagcgcagacgggtacgggcaaaacggcggcgttcgcg
ttgccgctattaaacaatgttgacgcatccgttaagcaaccacagatattagtattgact
ccaacacgcgaactggctttacaggtcgcggaagccttcaaccaatacgctaaatacacc
aaaggtgttgaagtattggctctgtatggcggacaaagctatggcgtgcagctaagcgca
ctgcgtcgtggcgcacaaatcattgtggcaacacctggtcgtttgattgaccatattaac
cgtaagaccattgatttgtcggatctgaaagccttagtgctggacgaagccgatgagatg
ctacgcatgggctttatcgatgatgttgaaagcatcatggaaaaaacaccagtagagaaa
caaacctgtttgttctcagcaaccatgccaaagcagatccaatctatttgttctaagtat
ttagataacgcagagcaagtaaaaatcacaccacgtaactcaacggtagacaccattgag
caagtttactggcgtgcaacgacacataaaaacaaagccatcgtacgtttcttagaagcg
gaagattacgatgcgtctatcgtgtttgttcgtactcgtaacgatactgttcagctggct
gagctactcgagcgcgaaggtttctctgcagcaccacttaatggtgacatgaaccagcaa
gcccgtgagcgcacggtagagcgtctgaaaagcggtctgttagacatcgttatcgcaact
gacgttgcggcacgtggtctggacgtagatcgtctgagcttggttatcaactatgatatc
ccacaagacagcgaagcctatgttcaccgcatcggtcgtacaggtcgtgctggtcgtaaa
ggtaaagctatcctgtttgttaaaggtaatgagcgttacctgctacgtaacatcatgcgt
catactcgctctgatatcgagcaggttgaactgcctaacgcgaaagttgttgagcaaaag
cgcattgaagcactacaaggcaagctaagcctggcgctggatcacaaagacattgagttc
ttcagtgaagtggcacaaggcatggctgaaaagctagagctgactcaaacagaactgtcc
gctgcactactgtgcctggcacagcagcagtctccgctgaaagtgcaagagatccaggta
caacgcgagcgtcgcgagcgcgatggtaatcgtgacggtaaccgcgaacgtcgcggtgag
cgtggcgaacgtaaaggcaatgcacgtcgcaacaccggtcctatggatacctatcgtatc
gaagtaggtcgtgagcacggcgtacaggtcaagaacatcgttggtgcgattgcgaacgaa
gcggatatctcaagcaagtttatcggtgaaatccgtttgtttgatgagcacagcacagtg
cagctgcctcaggatatgcctgcagatactctgtcacacttccagagcgtttacatttgt
cagcgcccaatgaagatgaccaagagcacacacccagccgatcaaggcaatggtggtgag
cgtcgcggtggcgaacgtcgttcgggcggtcgtgatgagcgtcgctttgaaggccgcaac
gaaggccgtggcgatcgcaagcgcagcttcaaagacccgcgtggtgacaagcgtgataac
agacgcaaagagcgtggtgagattagcttttcctaa
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