Pseudoalteromonas rubra: AT705_08125
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Entry
AT705_08125 CDS
T04179
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT705_08125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prr03019
]
AT705_08125
Enzymes [BR:
prr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT705_08125
Messenger RNA biogenesis [BR:
prr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT705_08125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALU42913
UniProt:
A0A0U2Z559
LinkDB
All DBs
Position
1:1845543..1846943
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AA seq
466 aa
AA seq
DB search
MSFSSLGLSPEINQAVADQGYSTPTPIQEQAIPAILQGRDIMAAAQTGTGKTAGFTLPML
ELLSNKPKVQANQVRALILTPTRELADQVWQSVELYSKHLTLSCQVVYGGVKINPQMMKL
RKGADVLVATPGRLLDLYQQNAVKFDQLEMFVLDEADRMLDMGFIHDIKRLIKLLPQRRQ
NLLFSATFSDEIRNLAKGLIQDPVEISVAPANSTAKSVTQWVYPVDKSRRTALLKHLLTT
HDWQQVLVFTRTKHGANRLVRDLEKSKINAAAIHGNKSQSARMKALAGFKSGELRVLVAT
DIVARGLDIQELPHVVNFDLPNVYEDYVHRIGRTGRAGATGEAVSFVSEDVASDLFGIER
LIQQLIPRVVEPGFEPQNPVPESKLDTRPIKPKKPKKPKKPKTDTAQQGGQNGQANKPKS
NHKAHSGNDKQGAPKRRRRRPANSQNKPTSHKPAAQKKSSPDSGAK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcagcagtctcggcttatctccagaaatcaatcaagccgtagccgatcagggc
tactcaacgccaactcccattcaggagcaagcgatccccgctatcctgcaagggcgagac
atcatggcggcagcccaaaccggcacaggtaaaaccgcaggctttaccctgccaatgctg
gaactactcagtaacaagccaaaggtccaggccaatcaggtcagagcgttaatcctgaca
cccacacgcgagctggccgatcaggtatggcaaagtgtcgagctatacagcaaacatctg
accttatcttgtcaggttgtctatggtggggtcaaaatcaacccacaaatgatgaagtta
cgcaaaggtgccgacgtgctggttgcaacacctggtcgactgctcgatctgtaccagcaa
aatgcagtgaagtttgaccaactggagatgtttgtactcgacgaagctgacagaatgctg
gatatgggatttattcatgatatcaaacgtctgatcaaactactgccgcagcgccgtcag
aacctgctgttttcagccaccttttctgatgagatccgcaatctggcaaaaggcctgatc
caggatccggttgagatttccgtggcaccggcaaacagcaccgccaaaagcgtgacccaa
tgggtttacccggttgataaaagccgccgcaccgcactgctcaaacacttgctaaccacc
catgactggcaacaggtactggtctttacgcgcactaaacatggtgccaatcgcctggta
cgggatctggagaaaagcaaaattaacgcggctgccattcatggtaacaagagtcagagt
gctcgtatgaaagcacttgcgggctttaagagtggcgagttgcgagtgctggtggccacc
gacatcgtcgcgcgaggcctggatattcaggagctgccacacgttgtcaactttgacttg
ccaaatgtgtatgaagattacgtgcatcgtattggtcgtacaggccgtgctggcgcgaca
ggcgaagccgtttcctttgtcagcgaagacgtcgccagtgacctgtttggcattgagaga
ctgatccaacaactgatccctcgcgttgttgagccgggcttcgaaccacaaaatccggta
cctgaatctaagttggacacgcgccccattaaacccaaaaaacctaaaaaacccaagaag
ccaaaaaccgacacggctcagcaaggtgggcaaaacggccaggccaacaaaccaaaaagc
aaccacaaagcgcactctggaaatgacaaacaaggcgcgccaaaacgccgcagaagacga
ccggctaacagccagaataaaccaacgagccacaaaccggctgcacagaaaaagtccagc
ccggatagcggagctaagtaa
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