Pseudoalteromonas rubra: AT705_10290
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Entry
AT705_10290 CDS
T04179
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT705_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prr03019
]
AT705_10290
03016 Transfer RNA biogenesis [BR:
prr03016
]
AT705_10290
Enzymes [BR:
prr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AT705_10290
Messenger RNA biogenesis [BR:
prr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AT705_10290
Transfer RNA biogenesis [BR:
prr03016
]
Prokaryotic type
tRNA degradation factors
AT705_10290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ALU43297
UniProt:
A0A0U2Z670
LinkDB
All DBs
Position
1:complement(2326366..2328861)
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AA seq
831 aa
AA seq
DB search
MSKQDPYLSREQEKYDNPVPSREFILDHIQKSNNKTNFNQLCQDLKVFEDERQIAFKRRL
RAMERDGQLFFNKFKCYVIPTDDGLVKGRVIGHRDGFGFLEVEGEAKDWFITKYQMDRVL
HGDWVLAKAGSRGSGGKVDARIVRVLEKERAPIVGRFFVEHGMAVVVPEDPRLTQDIIVL
PGSENGARHNQMVQVQITQSPSKQMNAVGKVTEVLGDHMAPGMEIEVALRNHEIPYEWPQ
AVLDQVAEHGEFVAEPDKLGRVDLRDLPLLTIDGEDARDFDDAVYCERKKSGGWRLWVAI
ADVSHYVPKGSALDKEAISRGNSVYFPEQVVPMLPKVLSNGLCSLNPQVDRLCMVAEMTV
SEAGRLSGYRFYEAVMNSHARLTYTKVHAMLQGDEALREQYSALYPHISELHQMYMALKS
ERQARGAIEFETLETRFVFNAHRKIESIVPVVRNDAHKLIEECMILANVSAARLLEKHEA
SALFRVHDQPDPEKLSQFRLFLQDLGIESTLGHEPTPLEITEALAGLGERPELELIQTML
LRSMKQAVYQPDNIGHYGLALKAYAHFTSPIRRYPDLVVHRAIKGILAEQGQQVSGAYVY
ESDEADKLGEQCSMTERRADDATREVADWLKCEFMQDHVGDEFTGVISSVTNFGLFVRLD
ELQIDGMIHVSNLGHEYFHFDGAKHCLIGEHSRSVFRLGDKLSVVVNSVSLDERRINLTL
AEEAVPDRYARRRRKATTESAGKSVRAQLKDGKIPGKDKKDSKAGKDATAVKSDGKKPKK
GKKTTPKGKAKKAKQAATLTGKKKTKKSASKTKAKRPGKNARKRNKSSAGA
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacaggatccttatctcagccgagaacaagaaaaatacgacaacccggtgccc
agccgtgagttcattcttgaccatattcaaaaaagcaataacaagactaatttcaatcag
ctttgtcaggacctcaaagtcttcgaagatgaacgacagattgcctttaagcggcgcctc
agagccatggagcgtgatggccagctgtttttcaacaagttcaaatgttacgtgatccca
acggatgatggtctggtcaaaggtcgggtgattggccaccgtgatggctttggctttttg
gaggtggaaggcgaagccaaagattggtttatcactaagtatcagatggacagagtattg
cacggagattgggtgctggcgaaagcaggctccagaggctccggtggtaaagtggatgca
cgcattgtgcgggtactcgaaaaagagcgcgcaccgatagtcgggcgcttctttgttgag
catgggatggcagtcgtagtaccggaagatccgcgtctgacgcaggacatcattgtgctg
ccgggcagcgaaaatggtgcccgtcacaaccagatggttcaggttcagatcacccaaagt
cccagcaagcaaatgaatgcagtgggtaaggtgaccgaagtactgggcgaccatatggcg
ccagggatggagattgaggtcgcgttacgaaaccacgaaatcccctatgagtggccacaa
gctgtgcttgatcaggttgcagagcatggtgagtttgtcgccgagccggataaactcggt
cgagtcgatttacgtgatctaccactgctcaccatcgatggagaagatgcccgagatttc
gatgatgcggtttactgtgagcgcaaaaagtccggcggctggcgtttatgggtcgccatt
gccgatgtgtcgcactacgtgcctaaaggcagtgcgctcgataaagaagccatctctcgg
gggaattcagtgtacttcccagagcaagtggtgcctatgctgcccaaagtcctgtctaac
ggcttatgttctttgaacccgcaagtagaccgtctctgtatggtggccgagatgacagtg
tccgaagcgggtcgtttgtcagggtatcgcttttacgaagcagtgatgaattctcatgcg
cgtctgacctatactaaggtgcatgcgatgttacagggcgatgaagccttgcgtgaacaa
tatagcgcactgtacccacacatcagtgagttacatcagatgtacatggcactgaagtct
gagcgtcaggcccggggtgccattgaattcgaaaccctggagacgcgttttgtcttcaac
gcacaccgcaaaattgagtccatcgtacctgtggtacgtaatgacgcccacaaactgatt
gaagaatgtatgatcctggccaatgtgtcggcagcgcggttgctggaaaaacacgaagcc
agtgcgctgtttcgggtgcatgaccagcccgatccggaaaaactcagccagttcaggcta
ttcctgcaagacttagggatcgaaagtaccctgggtcatgagccaacgcctttggagatc
actgaagccctggctggcctgggtgagcgtccggagctggaactgatccagaccatgcta
ttacgctcgatgaaacaggctgtttatcaaccggataacattggtcactatggtcttgcg
ttgaaggcgtatgcacactttacctcgcccatccggcgttatccggatctggtggtgcac
cgtgcgattaaagggatcctggcggagcagggacagcaagtgtctggtgcttatgtgtat
gaaagcgatgaggctgacaagctcggtgagcaatgttcaatgacagaacgtcgcgccgac
gatgcgactcgcgaggtagcggactggctcaagtgtgaatttatgcaagatcacgtgggc
gatgaatttacgggtgtgatttcatccgtcaccaattttggtttgtttgtcaggcttgat
gagttacaaatcgatggcatgatccatgtcagtaacctgggccatgaatatttccatttt
gatggcgcgaagcattgcctgatcggggagcacagccgcagtgtctttagactcggtgat
aagctgagtgtggtcgtgaactccgtgagcctggacgagcgacgcattaacctgacactg
gccgaagaggcggtaccagatcggtatgccagacggcgtcgtaaagcgacgacagaaagc
gctggcaaaagtgtacgtgcgcagttgaaagacggcaagatcccgggcaaagacaaaaaa
gatagcaaagctggcaaagacgcgacagctgtaaaaagcgacggtaaaaaaccgaaaaag
ggtaagaagaccacgcctaaaggcaaggctaaaaaagccaaacaagcagccactttgacc
ggtaaaaagaaaaccaagaaaagtgccagcaaaaccaaggcaaagcgtcctggtaaaaac
gcgcgtaaaagaaacaaatcgagtgcgggagcataa
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