Pseudoalteromonas rubra: AT705_10990
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Entry
AT705_10990 CDS
T04179
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AT705_10990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prr03021
]
AT705_10990
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_10990
Enzymes [BR:
prr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AT705_10990
Transcription machinery [BR:
prr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AT705_10990
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AT705_10990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ALU43422
UniProt:
A0A0F4QF93
LinkDB
All DBs
Position
1:complement(2508944..2509930)
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AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAVSSTRSKVVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVSLEGKDEVFLTLTKSGVGPVTAADIQHDGD
VTIANPEHVICHLTADNSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLEAFVDLRDVSEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaaccgaattcctaaaaccaagattagtcgatatcgacgctgtaagc
tcaacgcgttctaaagtagttttagagcctctagagcgtggtttcggccacacactaggc
aatgctctacgtcgtatacttctttcatctatgcctggttgtgctgtgacagaagttgaa
attgacggtgtattgcacgagtacagcgcgaaagaaggcgtacaagaagacatcattgaa
attctgttgaacctgaaaggtctggcagtatctctagaaggtaaagatgaagttttcctt
accctgactaagtctggtgtaggccctgtgactgcggctgatatccagcacgacggagac
gtgactattgccaaccctgagcatgtgatctgtcaccttacggctgacaatagtgagatc
agcatgcgcattcgcgttgagcgtggtcgcggttatgtaccggcgtctagtcgtttatcc
tctgatgacgatgagcgcccaatcggccgtttgctgcttgatgcatcattcagtccggtt
gagcgtattgcgtactcggttgagtcagctcgtgttgagcaacgcacagacttagacaaa
ctaatcatcgatatggaaacgaacggcactttggatcctgaagaagcgatccgtcgtgcg
tctactattcttgctgagcagctggaagcattcgtagatctacgtgatgtttctgagccg
gaagaaaaagaagagaagccagagttcgatcctattctgcttcgtccagtcgatgactta
gagctaactgtacgttctgcgaactgtctgaaagccgagcaaattcaatatatcggtgac
ttagtacagcgtactgaagtagagcttctgaaaacaccaaaccttggtaagaagtctctg
actgaaattaaagacgtgctagcttcacgtggtctttctctgggcatgcgcctggaaaac
tggccacctgcaagtctggctgagtaa
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