Pseudoalteromonas rubra: AT705_14870
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Entry
AT705_14870 CDS
T04179
Name
(GenBank) RNA polymerase subunit sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
prr
Pseudoalteromonas rubra
Pathway
prr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AT705_14870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prr03021
]
AT705_14870
Transcription machinery [BR:
prr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AT705_14870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DSRB
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
ALU44116
UniProt:
A0A0U2X850
LinkDB
All DBs
Position
1:complement(3422638..3424482)
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AA seq
614 aa
AA seq
DB search
MDQSPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIQVAESAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEILIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKYEAEEMRLSDIVSGFFDSLEDDEAPISATH
IGSELSEEDLDDEDDDGDEDDDDSEDADTGPDPEIAREHFEELRTLYNNARKCFEVKGRA
HPDSQAAIAEIGELFRKFKLVPKQFDRMVNNMRDMMDRVRVQERIIMKQACQIAKLPKKT
FIKHFANNETDMAWVDAEIAAGDKHSAKLAQVKPEIERCVNKLTAIEESTGLSIERIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPE
ELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPVDSATMESLR
GATNEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDLLKSFLDVKG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatctcctcagtcacaactcaaacttctgattcagaaaggtaaagagcaaggt
tacttaacttttgcagaagttaacgatcaccttccacaagacatcatagattcggatcaa
gtagaagatatcattagcatgatcaatgatatgggtatccaggtagcagaatctgcaccc
gatgccgatgaactgatgatgcaggaaaccacgaccgacgaggatgcagccgaagcagcg
gctgccgcattggcaacggtagaaaaagaaatcggcagaaccacagatcctgtacgcatg
tacatgcgtgaaatgggcacggttgaactgctgacgcgtgaaggcgaaattctcatcgcg
aaacgcattgaagaagggattaatcaggttcagatctcggttgccgagtatcctgaagcc
attacttacctgctggagcaatgggacaaatacgaagccgaggagatgcgcctgagcgac
atcgtttctggcttctttgattcgttggaagacgatgaagcccccatttcagcaacgcat
atcggttcagagctcagcgaagaagatctcgacgatgaagatgatgatggcgatgaagac
gacgacgattcggaagatgctgatactggcccggatcctgaaattgcgcgcgagcacttc
gaagaattaagaaccctatacaacaatgcacgtaagtgttttgaagtaaaaggccgtgcg
catccggattcacaagctgcgatcgctgaaattggtgagctgttccgtaagttcaagctg
gtaccaaagcaatttgaccgcatggtaaataacatgcgtgacatgatggatcgcgttcga
gtacaagaacgtatcatcatgaagcaagcttgccagatagcgaaattgccgaagaaaacc
ttcattaagcacttcgccaacaatgaaacagatatggcctgggtcgatgcagaaattgcc
gcaggcgacaaacactcagctaagctggcacaagttaagccagagatcgagcgctgtgtg
aacaagctaacggccattgaagaaagcacaggcctgagcattgaacgtatcaaagacatc
aaccgtcgtatgagtattggtgaggcgaaagcccgtcgtgcgaagaaagaaatggttgaa
gccaacttacgcctggttatctcaattgccaagaaatacaccaaccgtggtctgcaattt
ttggatctgatccaggaaggtaacattggtctgatgaaagccgttgataagtttgagtac
cgtcgtggttataagttctctacttatgcaacttggtggatccgtcaggcaatcacccgc
tctattgcggaccaggcacgtactatccgtattccagtgcatatgattgaaacgatcaac
aagctgaatcgtatttcgcgtcaaatgctacaggaaatgggtcgtgagccgagcccggaa
gagctggcagagcgcatgatgatgccagaagacaagatccgcaaagtgctgaaaattgcc
aaagagccaatctccatggaaaccccaatcggtgatgatgaagattcgcatctgggtgat
ttcatcgaagacaccacgattgagtcgccggtggattcagccacgatggaaagcctgcgt
ggcgccactaatgaggtacttgcaggcctgacggcacgagaagcaaaagtactgcgcatg
cgttttggtatcgacatgaataccgaccatacactggaagaagttggtaaacagtttgac
gtaacacgtgaacgtatccgtcagattgaagccaaggcgcttcgaaagctgcgtcatcca
tcacgctctgatctactgaagagcttcctggatgtcaaaggctaa
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