Pseudoalteromonas rubra: AT705_16650
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Entry
AT705_16650 CDS
T04179
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AT705_16650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_16650
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AT705_16650
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AT705_16650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_5
AAA_30
DUF87
UB2H
Kinesin
AAA
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ALU44420
UniProt:
A0A0U2X954
LinkDB
All DBs
Position
1:3814713..3816725
Genome browser
AA seq
670 aa
AA seq
DB search
MSDVFDLVSEFSPNGDQPTAIAQLCDGLEAGLAHQTLLGATGTGKTFTMANIIHNLNRPT
IIMAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIE
QMRLSATKALLERRDTIIVASVSAIYGLGDPDSYMKMMLLLKVGETMEQRAMLRRLAELQ
YTRNDMDFSRGTYRVRGEVIDIFPAESDTYAIRVEMFDEEIERISMFDPLTGAVEKHLVR
ATIYPKTHYVTPREKILDAIEKIKLELKERRNKLLTDNRLVEEQRVAQRTQYDIEMMTEL
GYCSGIENYSRYLSGRAPGEPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKEN
LVEYGFRLPSAMDNRPLKFEEFEAIAPQTIYVSATPGDYEIERSSGEVAEQVIRPTGLLD
PILEVRPVTTQVDDLLSEIYRRVELQERVLVTTLTKRMAEDLTDYLNDHDVRVRYLHSDI
DTVERMEIIRDLRKGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIG
RAARHINGKAILYGDVVTKSMRQAIDETERRRAIQHAYNEKHGLKPQALVKKITDVMDLG
EEVSSEQAAKISKAQKQPMVAKQSQSVTELTEQIKQLEAQMMQYARELEFEKAASIRDEV
QLLQQQLLQS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgtctttgacctggtttccgagttttcacccaatggcgatcagcctacggcc
atcgcacagttatgcgacggattagaagccggcctggcacatcagaccttgctgggggca
accggtacaggtaaaacctttaccatggccaatattattcataacttgaatcggccaacc
attattatggcgcacaataaaacactcgcggcgcagttgtatggtgagatgaaagagttt
ttccccaacaatgcggtcgagtattttgtctcttattatgattattaccagcctgaagcc
tatgtcgttgccagtgatacctttatagaaaaagacgcttcaatcaatgaacatattgaa
cagatgcgtttgtctgcgacaaaagccttgttggagcgccgggatacgatcattgttgct
tcggtttcggcgatttatggtttgggcgacccagactcatacatgaaaatgatgctgttg
ctcaaagtgggtgaaaccatggaacaacgggctatgttgaggcgcctggcggaacttcaa
tatacccgcaacgatatggattttagtcgtggcacatatcgggtcaggggggaagttatt
gacatctttccggcagaatcggatacctatgcgatccgggtggaaatgttcgatgaagaa
attgaacgcatcagtatgtttgacccgctcaccggtgctgttgaaaagcacttagtacgc
gccacgatttacccaaaaactcactacgtcacgccgcgcgagaaaatcttagatgcgatt
gagaaaatcaaactggaactcaaagagcgtcgcaataaattgttgactgacaatcggctg
gtagaagagcagcgggttgctcagcgtacgcaatatgatattgagatgatgacggagctt
ggatattgctcaggcattgaaaactatagccgttatttatctggacgagctcccggcgag
ccaccgccaaccttactggattatttgccagacgatgcgctcatgatcattgatgaatct
catgtcacggtgtcacagataggtgctatgtataagggagatcgcagccgtaaagaaaac
ctggttgaatatggattcagattgccctctgccatggacaatcgtcccctcaaattcgaa
gagtttgaggcgatagcaccgcaaacgatttatgtttcggcgacacctggtgattatgaa
attgagcgatcgagcggggaagtggctgagcaggtgatccgtccgacaggactactcgat
cctatattggaagtgcgcccggttacgactcaggttgatgatctgctctcggaaatctat
cgacgggttgagctgcaggagcgggttctcgttacaacgctgaccaagcgcatggcggaa
gacttgaccgactacctcaatgatcatgatgttcgggtgcgttatttacactcggatata
gatactgtggagcgtatggagattatccgtgatttgcgcaaaggcgtctttgatgtgttg
gttggtattaacttacttcgagagggcctggacatgccggaagtgtcattggtggcgatt
ctggatgcagataaagagggctttttacgttcgactcgctctctgatccagacgattggt
cgggctgcgcgacacattaatggtaaagcgattttgtatggtgacgtggtaactaagtcc
atgcgccaggcaatcgatgaaactgagcgacgtcgtgctattcaacatgcatataatgaa
aagcatggtttgaaaccacaagctctggtgaaaaagatcactgatgtaatggacttaggt
gaagaagtgtcgtcggaacaagctgcgaagatctcgaaagcacagaaacaaccgatggtt
gccaagcagagtcagagtgtgactgaactcacagagcagataaagcaattagaggctcag
atgatgcagtatgcgcgcgagttggagtttgagaaagcggcgagtatacgcgatgaagtg
cagctattgcagcagcaattattacagagctaa
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integrated database retrieval system
