Pseudoalteromonas rubra: AT705_21675
Help
Entry
AT705_21675 CDS
T04179
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT705_21675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prr03019
]
AT705_21675
Enzymes [BR:
prr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT705_21675
Messenger RNA biogenesis [BR:
prr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT705_21675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_19
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALU45551
UniProt:
A0A0U3IBS4
LinkDB
All DBs
Position
2:586846..588144
Genome browser
AA seq
432 aa
AA seq
DB search
MNFKSFSFPDALLQALDELNFHTLTPIQQAAIPVVRRGHDVLATAQTGTGKTAAFALPVI
QRLLEGESVGSARALILAPTRELAEQIANNCQAFCQYTPLTVQAVYGGVNIEGQTQRLSQ
GVDILVATPGRLLDLIRLGAVSLAQVKYLVLDEADRMLDMGFVADMQKVIDMVSEDRQLL
LFSATFPTAVKQFAKQVLREPKLVQAAKENTTAETVRHVVYPVEQKRKQELLSELIGKKN
WLQVLVFVNMKDDADQLVKELELDGISATVCHGDKSQGARRRALREFKEGKVRVLVATEV
AARGIDIDGLPRVINFDLPYLAEDYVHRIGRTGRAGNSGQAISFVAREEEQTLIHIETLI
GQKIQRYYLPGYEVASRENLIDNLARKPSHQRRKARTNRPSNQASGEARAKNRSKISNVR
QRLKGAQLKLQK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaagtctttcagttttcccgatgccttgttacaggcgcttgatgaattaaat
ttccataccctgacaccaatacaacaagcggctattccggttgtgcgtcgtggtcatgac
gtactggctactgctcaaaccggcacgggtaaaacggcggcgtttgcactgcctgtgatc
cagcgtttgttagaaggggagtcagtcggctctgcacgtgcccttatcctcgcaccgaca
cgtgaattggccgagcaaattgccaacaactgtcaggcattctgtcagtataccccgctg
accgttcaggcagtatatggtggtgtgaatattgaagggcagacacaacgtttatctcaa
ggggttgatatcctggttgcaacaccggggcgtttattggatctaatccgtcttggtgct
gtgagcctggcacaggttaaatatctcgtattggatgaagcagaccgcatgctggatatg
ggctttgttgcggacatgcaaaaagtcatcgatatggtgagcgaagaccgtcagttattg
cttttctctgctactttccctacagctgttaaacaattcgcaaaacaagtacttcgcgag
cctaaattggtacaggctgcgaaagaaaacaccacggcagaaacggtaagacatgttgtt
tatccagttgagcaaaaacgtaagcaagagctgctttcggaattaattggtaaaaaaaac
tggctgcaagtgttagtttttgtcaacatgaaagatgatgctgatcagcttgttaaagaa
ctggagctggatggtatcagtgccactgtgtgtcacggtgataaaagtcagggagcacgt
cgccgggcattacgtgagtttaaggaagggaaggtaagagtcttagtggctacagaagtg
gctgctcgtggcatcgacatagatggactgcctcgcgtaattaattttgatttgccatat
ctggctgaagactatgtgcaccgcattggccgtactggtcgggcaggaaactccggccag
gcgatctcgtttgttgcacgagaagaagagcagactctgatccatattgaaactttgatt
ggacaaaaaattcagcgttattatctgccgggttacgaagtggcgagtcgcgaaaatctg
atcgataaccttgccaggaagccgtctcaccaacgtcgtaaagcacgaactaatcgcccg
agcaatcaggctagtggtgaagcgcgagctaaaaatcgctccaaaatcagcaatgtgcgc
cagagactgaaaggcgctcagctaaagttacagaagtaa
DBGET
integrated database retrieval system
