Pseudoalteromonas rubra: AT705_21975
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Entry
AT705_21975 CDS
T04179
Name
(GenBank) RNase D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
prr
Pseudoalteromonas rubra
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prr03016
]
AT705_21975
Enzymes [BR:
prr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AT705_21975
Transfer RNA biogenesis [BR:
prr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AT705_21975
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
UbiA
Motif
Other DBs
NCBI-ProteinID:
ALU45609
UniProt:
A0A0U3HVQ6
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All DBs
Position
2:661280..662413
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AA seq
377 aa
AA seq
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MQYQFIQHQTELDAFTAKLTDSDVLAIDTEFMRRRTLYPEIALIQVYNGEHLALIDPLSE
LDFSGLWHLLRDEQIVKVLHSPSEDIEVFQKFAGFVPAPLFDTQFALQLLGEGNCVGFAN
MVKMMLDVELDKSMSRTDWLKRPLQASQLEYAAADVFYLLPCYESLSKKVAEKGLSDIVT
SESQLIAQKRAFRTPDAYLYLSVKNVWQLKPRDLAVLRELASWRQNKAEKKNLALNFVLK
EQNMVEIAKRRPCSLNSLRNVPGVEQMEVNRSGKEILACIEAGKAVPEADLPKRVQRLID
FPGYKGAAKEIKQSIAEVAKQQGIPLDVFASKKQINQVIGWNWKLDDAQRNKFMKPDLFL
GWRDSQLKDALSKWQVE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtgcagtatcaatttatccaacatcaaactgagcttgatgcttttacagcgaaactgaca
gatagcgatgtgcttgcgatagacacagagtttatgcgccgaagaactttgtatccagaa
atcgcgttgatccaggtttataacggtgagcatcttgccctgatagacccattaagtgag
ctcgatttttcagggttatggcatttacttcgggatgaacagatcgtaaaagtacttcat
tctccctctgaagatatcgaggtattccagaagtttgcaggatttgtacccgcaccactg
tttgatacgcagtttgcattgcagctgcttggagaggggaattgtgtcggattcgccaat
atggtgaaaatgatgctggatgttgaacttgataagagtatgtccagaactgactggctc
aaacgtccattacaggcaagccagcttgagtatgctgcggcggatgtattttacctgctc
ccttgctatgaaagtctcagcaaaaaggtcgctgagaaagggttgtcggatatcgtgacc
tctgagtcccaactgattgcccaaaagcgtgctttcaggacgccggacgcttatctatat
ttaagtgtaaaaaatgtctggcaattaaaacctcgggacctggctgtattacgtgagctt
gcaagttggcgacaaaataaagccgagaagaaaaacctggcacttaactttgtacttaaa
gaacaaaatatggttgagattgcaaaacgtcggccatgctcgctgaacagccttcgtaat
gtacctggtgtggaacaaatggaagtaaaccgctctggtaaggaaattctggcgtgtatt
gaagctggtaaagctgtaccagaagctgatttaccaaaacgggtgcaacgattgattgat
ttccccggttataagggggctgctaaagaaataaaacaatcgatagctgaagttgctaaa
caacaggggatcccgctggatgtatttgcttctaagaagcaaattaatcaggtgataggg
tggaactggaaactagatgatgcgcaaagaaataagtttatgaagccagatttgtttttg
ggctggcgtgatagtcagttaaaagatgcactttctaaatggcaggttgagtag
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