Prosthecochloris sp. HL-130-GSB: B9H02_05275
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Entry
B9H02_05275 CDS
T04847
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prs
Prosthecochloris sp. HL-130-GSB
Pathway
prs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9H02_05275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prs03019
]
B9H02_05275
Enzymes [BR:
prs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B9H02_05275
Messenger RNA biogenesis [BR:
prs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B9H02_05275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
SAVED
Motif
Other DBs
NCBI-ProteinID:
ARM30825
LinkDB
All DBs
Position
complement(1094554..1095813)
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AA seq
419 aa
AA seq
DB search
MKTFSSLDIIDPIARALREEGYTTPTPIQAQAIPKILQGNDLLGCAQTGTGKTAAFAIPV
LQRLSSRPAPGRRKKIRSLVLTPTRELALQIGESFSAYGRHTGLANKVIFGGVGQKPQAD
ALRKGVDIVVATPGRLLDLMNQGHLHLKDIEIFVLDEADRMLDMGFIHDIRKILSALPEK
KQSLFFSATMPKEILSLAGSILHNPSKVTVTPVSSTVDTIDQQVYFVDKGNKNRLLVHLL
KNPDISTALVFTRTKHGADKVVKYLLRHDISAEAIHGNKSQNARQRALKNFKAQTTRILV
ATDIAARGIDVDDLEYVINYDLSNIPETYVHRIGRTGRAGAAGTALSFCNAEEKAYLRDI
EKLTSKTIPVIDHHPFPLTDHQPAAAVPQQGKQSNGRPGLKNRAKNSGRRWSVKTRKSR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattcagttcactcgatattatcgatccgattgcgcgggcattgcgcgaggaa
ggatatacaactccaacccctatccaggcacaggcaataccgaagattctgcagggaaac
gacctgctcggctgcgcccagacgggaacaggaaaaaccgctgccttcgccatcccggtt
ctgcagcggctctcgtcacgcccggctcccggcagaagaaaaaaaatcaggagcctcgtc
cttaccccgacccgggaactcgcactgcagatcggcgagagcttcagcgcctatggccgg
cataccggcctcgccaacaaggtgatttttggtggtgtaggccagaaaccgcaggcagac
gcactgcgcaaaggggttgacatcgtcgttgccacccccggacgcctgctggacctcatg
aaccaggggcaccttcatctgaaggatatagaaatttttgtgctcgacgaagccgaccgc
atgctcgatatgggcttcattcacgacatccgcaaaattctctcagctctgccggaaaaa
aaacagtcactgttcttttcggccacgatgccgaaagaaattctctcgctggcaggctcc
attctgcacaacccctcgaaagtaacggtaacgcccgtatcgtcaacggtcgacaccatc
gaccagcaggtgtactttgtcgacaaaggaaataaaaaccgcctgctggtacacctcctc
aaaaatcccgatatctcgaccgcactggtattcacccgcaccaagcacggagccgacaag
gtcgtcaaatacctgctcaggcatgacatcagcgcagaggcgattcacggcaacaaaagc
cagaatgcaagacagcgcgcactgaaaaacttcaaagcgcagaccaccaggatcctggta
gcgacagacatcgcagcacggggtatcgatgttgacgatctcgagtatgtcatcaactac
gacctctccaacattcccgaaacctacgttcaccgtatcgggcggaccggacgggcagga
gctgcaggcacagcactctcattctgcaacgccgaagaaaaagcatatcttcgcgatatc
gagaagctgacatcgaaaacgattcccgtgatcgatcaccacccgttccccctcaccgac
caccagcctgccgctgccgtgccccagcagggaaaacaaagcaacggtcgcccggggctg
aaaaaccgggcaaaaaacagcggaagacgctggtcggtcaaaacaagaaaaagcagatag
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