Prosthecochloris sp. HL-130-GSB: B9H02_05665
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Entry
B9H02_05665 CDS
T04847
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
prs
Prosthecochloris sp. HL-130-GSB
Pathway
prs02020
Two-component system
prs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
B9H02_05665
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B9H02_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prs03021
]
B9H02_05665
Transcription machinery [BR:
prs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B9H02_05665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
LacI
MarR_2
HTH_26
Gal4_dimer
Motif
Other DBs
NCBI-ProteinID:
ARM30882
LinkDB
All DBs
Position
1170870..1172327
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AA seq
485 aa
AA seq
DB search
MPDFKLQQSQRAQLSAQQILTSQLLQLPLLNLEQRIYDELQDNPVLELVEEKHESVSERD
DSDDMDEHGDGMFDSVERFEPGRDKTAKAEERSSDQDQALPNFTIDRTPKEHFFQAVQED
SLEEHMLRELSLREDLDQDDLLIAAEVFGNLDDDGYLPDGAAFIVDSLESNHGLIADVSD
VNRIIDIVSRMEPAGIGVASLRERLIVQLESRRGDLSPRLYADAFGVLHHHFDDLLNNRH
EKILREMQISPARLEAVVNLVVTLDPHPYSEPSGTSQYIVPDFVVTYEEGKLTASLNDRS
NLSVRVSEAYREMLGNRSIPRADRSFVRQNVHKAKEFTSAIAQRRHTLLSVIRALMEFQY
DFFVSGPSVLHPLTMKEVAQKTGFDLSTISRAVNGKYVQTRFGTFELKYFFSGGMTTEDG
EEMSTRLVKARLKQMIEQENPSKPLSDDRLAGMLEEKGIKVARRTVAKYREQMQIPVARL
RKKIF
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatttcaagcttcagcagagccagagggctcagctttcagctcagcagatactg
acaagccagttactccaattgccgctgttgaacctcgaacagaggatctacgacgagctt
caggacaaccccgtgctcgagcttgtcgaggaaaagcatgaatctgtttcggaacgggat
gacagtgacgatatggatgaacatggcgatggaatgtttgattccgtcgaacgcttcgaa
cccggccgggacaagaccgccaaggcggaagagcgttcatccgaccaggaccaggctctg
ccgaacttcacgatagaccggacacccaaagaacattttttccaggctgttcaggaggac
tctctggaggagcatatgcttcgtgagctttcgctgagggaggatctcgatcaggacgac
cttctcatagccgccgaagttttcggcaatcttgacgatgacggctacctgcccgacggg
gccgcttttattgtcgacagcctcgagtcgaaccatggcttgattgccgatgtatccgat
gtcaaccggatcatcgatatcgtttcacgcatggaacctgccggtatcggagtggcgtcg
ctcagagaacggctgatcgttcagctggaatcacgcagaggagatctttccccccgcctg
tatgccgatgctttcggggtgctgcaccaccatttcgacgatctgctcaacaaccggcat
gagaaaattttgcgtgagatgcagatctctccggcacggctcgaggcggttgtcaatctt
gtcgtgacacttgacccgcatccttacagcgaaccgtcgggcaccagccagtatatcgtg
ccggattttgtcgtgacctatgaagaggggaaactgacggcctcgctcaacgatcggagc
aatctatccgtcagggtttccgaagcctatcgtgagatgctcggcaaccgctccatcccc
agggccgatcgttcgtttgtgcgtcagaacgtacacaaggccaaggagtttaccagcgcc
attgcgcagcgccgacatacgcttctttccgttatcagggcattgatggagttccagtac
gacttttttgtttcgggtccttcggttcttcaccctctcaccatgaaagaggttgctcaa
aagaccggctttgacctttccacaatcagccgtgccgtgaacggcaagtatgtccagacc
aggttcgggacgttcgagctgaagtatttcttcagtggcggcatgacgacggaagatggc
gaggagatgtcgacaagacttgtcaaggcgcggttgaagcagatgatcgaacaggaaaac
ccatcgaagcctctcagtgatgaccggctggccggtatgctggaggaaaaagggatcaag
gtcgcccgcagaacggttgcaaaataccgtgaacaaatgcaaattccagtagcaagatta
agaaaaaaaatattttaa
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