Planococcus rifietoensis: AUC31_07525
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Entry
AUC31_07525 CDS
T04201
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prt
Planococcus rifietoensis
Pathway
prt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUC31_07525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prt03019
]
AUC31_07525
03009 Ribosome biogenesis [BR:
prt03009
]
AUC31_07525
Enzymes [BR:
prt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AUC31_07525
Messenger RNA biogenesis [BR:
prt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUC31_07525
Ribosome biogenesis [BR:
prt03009
]
Prokaryotic type
rRNA helicases
AUC31_07525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
CMS1
Helicase_RecD
ERCC3_RAD25_C
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALS77014
UniProt:
A0A0U2QCP4
LinkDB
All DBs
Position
215460..216905
Genome browser
AA seq
481 aa
AA seq
DB search
MGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTRDGNVQGLVIAPT
RELAIQVSEELYNLGKDKNVRILSVFGGQEIGRQIRALKNRPQIIVGTPGRLLDHINRRT
LKLENVNTLVLDEADEMLNMGFIEDIQSIMSNVPDTRQTLLFSATMPDPIRRIAEKFMKT
PEIVKIKSKEMTVENIEQFFVKSVEREKFDILSRLLNVQQPELAIVFGRTKRRVDELAHA
LNLRGYLAEGIHGDLSQAKRMSVLKQFKANKIDILVATDVAARGLDISGVSHVYNFDIPQ
DPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVERTTKKKMEALVPPTADEAVIGLQ
RVAMEQLETMTEKNNLGSYRELATEMLDKHDAVDLVAAALKTLTKDPEDAPVQITEERPL
PSRGGGGYKGKGGGRSSGGGYKGKGGSGRPSSGGYKGRRESSSSSRPSGGGRPGRTRRHE
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgaggaagcgacacctatccaggaaggcacaatccgcctaggcatggaaggc
aaagacattatcggacaagcacaaacaggtactggtaaaacaaccgctttcggtattccg
ttgatcgagaaaatcgacacacgcgacggaaatgtgcaaggtttggtcattgcaccgaca
cgcgaattggcgatccaagtttctgaagaactttacaacctaggtaaagacaaaaacgtg
cgcatcttgtccgtattcggaggccaggaaatcggccgccagatccgcgctttgaaaaac
cgccctcaaatcatcgtcggcacacctggtcgtttgcttgaccatatcaaccgccgcacg
ctgaagcttgaaaacgtcaatacacttgtgttggatgaagctgatgaaatgctgaacatg
ggattcatcgaagacattcagtcaatcatgtcgaatgtcccagatacccgtcagacgctt
ctgttctctgcaacaatgccggatccgatccgccgcatcgcagaaaaattcatgaagaca
cctgaaattgtcaaaatcaagtcgaaagaaatgactgtcgaaaacatcgagcagttcttc
gtgaaatccgtagaacgcgagaagttcgacatcctttcccgcttgttgaatgttcaacag
ccggagcttgcgatcgtcttcggacgtacgaagcgccgcgttgatgaattggcgcacgca
ttgaatctccgcggctatttggctgaaggaattcacggcgaccttagccaagcgaaacgt
atgtctgttttgaagcaattcaaagcaaacaaaatcgatatccttgttgcgactgacgta
gcggcacgcggtcttgatatctcaggcgtatctcacgtatacaacttcgatatcccgcaa
gatcctgaaagctatgttcaccgcattggccgtactggccgtgcaggcaaaaaaggcgta
gccgtcactttcgttacaccacgcgaaatgggctacttgtcgatcgtcgaaagaacgacg
aagaagaaaatggaagctctagttcctccgactgctgacgaagcagttatcggacttcag
cgtgttgcgatggaacaattggaaacaatgaccgagaaaaacaaccttggcagctaccgt
gaacttgcaacagaaatgttggacaagcacgatgcagttgatttggttgcagcagcactt
aaaacgctgacgaaagatccggaagatgctccagtccaaattactgaagagcgcccattg
ccatcacgtggcggtggcggctacaaaggtaaaggcggcggacgctcatccggcggcgga
tataaaggcaaaggcggcagcggacgtccatcaagcggtggctataaaggccgtcgtgag
tcatcaagctcaagccgtccttcaggtggagggcgtccaggacgcactcgtcgtcacgaa
tcctaa
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