Xylanibacter ruminicola: PRU_0496
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Entry
PRU_0496 CDS
T01212
Name
(GenBank) putative pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pru
Xylanibacter ruminicola
Pathway
pru00040
Pentose and glucuronate interconversions
pru01100
Metabolic pathways
pru02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PRU_0496
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PRU_0496
Enzymes [BR:
pru01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PRU_0496
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
GRP
Motif
Other DBs
NCBI-ProteinID:
ADE83376
UniProt:
D5EXN7
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All DBs
Position
590843..592114
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AA seq
423 aa
AA seq
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MRNKLLMMLICCMAANVLIACSSASGNVSDSTIDEPTENEEQNQQDLPFGFCALSSRTDA
TQTYHITGGGYYSYPVPESATGVVVLTSDGRDMKAAIESAIKNSKNKVIIFDGSNGDFIV
SSTIKVTVSGKTLLGINNARLCTQWALTDEMKKALNDAGVLSMSTSDGGGVLVNGTEVKE
QAEYNTRKILIEMTGDKSENYRQAGIFTLNNCQNIIVRNLKFVGPGAVDVGGTDLLSCTG
TKNCWVDHCEFTDGLDDNFDITKSSDFHTVSWCTFSYTNRSYMHQNSNLIGSNDNEATGF
LNTTFAFNWWGVGCQGRMPMARVGKIHMLNNYFSSTTAYNGINPRKNSEFLIEGNYFDKG
VAKYYSQNDAVAVTWAADNYIAEATSIPSSVGATVSVPYQYSAVPASQVPTLVKQGAGAT
LFR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagaaataaactattaatgatgctaatctgctgcatggcagcaaatgtattgattgcc
tgttcgtcggcttctggtaacgtttccgacagcaccatcgacgaacctactgagaatgaa
gaacagaaccaacaggacctgccctttggcttttgcgccctgtcttcacgtaccgacgct
acccaaacctatcatatcacgggcggcggctattattcctaccctgtaccagaaagtgct
acaggtgtggtagtattgacatctgatggtcgggacatgaaagctgctatcgaaagtgcc
atcaagaacagtaagaacaaagtgattatcttcgatggctcgaatggcgactttatcgtg
tcatctactatcaaagtaaccgtttcgggcaaaacactgcttggcatcaataatgcccgt
ctctgcacccagtgggctttgaccgatgaaatgaaaaaagccctgaacgatgctggtgtg
ctcagcatgagtaccagcgatgggggaggagtgttagtaaacggcactgaggtaaaagag
caggctgaatacaacacacgtaagatactgattgagatgacaggcgataaaagcgagaac
tatcgtcaggctggcatttttacccttaataactgccagaacatcattgtacgcaatctg
aaatttgttggccctggggctgttgatgttggcggcaccgaccttctttcatgcacaggc
actaagaattgttgggtagatcattgtgagtttaccgatggattagacgataactttgat
atcacgaagtcgtccgacttccatactgttagttggtgcaccttcagttataccaatcgt
tcgtatatgcaccagaactccaatctcattggtagcaacgacaacgaagcaacaggtttc
ctgaacaccactttcgccttcaactggtggggtgtgggttgtcaaggacgtatgcctatg
gcccgtgttggtaagattcacatgctgaataattattttagcagcaccacggcctacaat
ggcatcaatccacgtaagaactcagaattcctgatagagggtaactatttcgacaagggc
gttgccaaatattacagtcagaacgatgctgtggctgtaacctgggcggctgataactat
atagccgaagcaaccagcatcccatcctctgttggcgccactgtttcggtgccttatcag
tattcggcagtgcccgccagtcaagttcccacattggtcaaacagggtgccggcgccact
ctctttcggtag
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