Xylanibacter ruminicola: PRU_0540
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Entry
PRU_0540 CDS
T01212
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pru
Xylanibacter ruminicola
Pathway
pru03030
DNA replication
pru03430
Mismatch repair
pru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PRU_0540 (holA)
03430 Mismatch repair
PRU_0540 (holA)
03440 Homologous recombination
PRU_0540 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pru03032
]
PRU_0540 (holA)
03400 DNA repair and recombination proteins [BR:
pru03400
]
PRU_0540 (holA)
Enzymes [BR:
pru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PRU_0540 (holA)
DNA replication proteins [BR:
pru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PRU_0540 (holA)
DNA repair and recombination proteins [BR:
pru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PRU_0540 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
ADE83308
UniProt:
D5EXS8
LinkDB
All DBs
Position
641980..642972
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AA seq
330 aa
AA seq
DB search
MRDLEAGKFAPVYYLMGDESYYIDKIADYIADHALRPEERDFNQTVVFGSDVNASQIADL
ARRYPMMAERQVVIVKEAQNIKNTEALERYFAQPMASTVLVMCHKNGKVDGRKSGYVKAI
KSHGILFESMKLKDRELPGFIENYLKKRQIRIDAKSVQMIAENIGADLSRLTGELDKVII
SLPEENRVVTPQVVEEQIGVSKEFNGFELRDAIVNRNVFKANQIIKYFDENPKAGSIYSF
LPLLFNYFQNLMIAFYAPNNKSQEGVAEWLEFKNPWQAKDYMTGMRNYSGMKVMQIISKM
REIDAKSKGLDNPNTPAGELMKELIFYILH
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatttggaggctggaaaatttgcgcccgtctattatctgatgggcgacgaatcg
tattatatcgacaagattgccgattatatagccgaccatgcattacgccctgaggaacgt
gattttaaccagactgtggtgttcggatcggacgtaaatgcgtcgcagatagccgacctg
gcacgccgctatcctatgatggccgagcgccaggtggtgatagtaaaagaggcgcagaat
attaaaaataccgaggcacttgagcgctattttgcgcagcctatggccagcaccgttttg
gtgatgtgccataagaacggcaaggttgacggtagaaaatcggggtacgtgaaggctatc
aaatcgcacggcatactgtttgagagtatgaaactcaaggatagagagctgccaggtttt
attgagaactatctgaaaaaacgccagatcaggattgatgccaaatcggttcagatgata
gccgagaatattggcgccgatttgagtagactgacaggtgagctggataaagtgatcatt
tcgttgcccgaagagaatagggtagtgaccccgcaggtggttgaggagcagattggtgtg
agcaaagagtttaatggatttgaacttcgcgatgccattgtgaaccgaaatgtttttaag
gcaaatcagataataaaatattttgacgaaaatccaaaggctggttccatctactcgttt
ctccctttgctctttaattacttccagaatttaatgattgcgttttacgcgccaaataat
aagagccaagagggcgttgcagagtggctggaattcaaaaatccatggcaagccaaggac
tatatgacgggtatgcgaaactactctggaatgaaggtgatgcagatcatttcgaagatg
cgagagattgacgccaaaagtaagggtctggataacccaaatacacctgctggagagctt
atgaaagaactgattttttacattttgcactaa
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