Xylanibacter ruminicola: PRU_0554
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Entry
PRU_0554 CDS
T01212
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pru
Xylanibacter ruminicola
Pathway
pru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRU_0554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pru03019
]
PRU_0554
03400 DNA repair and recombination proteins [BR:
pru03400
]
PRU_0554
Enzymes [BR:
pru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRU_0554
Messenger RNA biogenesis [BR:
pru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PRU_0554
DNA repair and recombination proteins [BR:
pru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PRU_0554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADE81738
UniProt:
D5EXU2
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All DBs
Position
complement(655387..657294)
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AA seq
635 aa
AA seq
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MTIDNYREILHRYWGYDDFRGIQREIIESIGSGHDTLGLMPTGGGKSITFQVPALAHEGT
CIVITPLIALMKDQVENLRRRGIKAAAIYSGLTHEEIIVTLENAIFGAIKLLYVSPERLS
SDLFQTKLRHMKVSFITVDEAHCISQWGYDFRPSYLQIAQIRKLVPGVPVLALTATATPQ
VVDDIQAKLTGDFNVFKMSFERKNLAYVVRHAEDKTEQLIHILKHVKGSAIVYARSRLRT
KEFSQIISEAGITSTFYHAGLDASTKDERQREWQENKYRVMVATNAFGMGIDKPDVRVVI
HMDCPDSIEAYFQEAGRAGRDGFKAYAVLLYNRHDETKLKKRITDTFPDKDYIRQVYEHL
AYYYQIGVGSGYNHTFEFNIDKFCHNFNHFPIRVDSALKILQRAGYLEYTEEQDNKARVM
FTVSRNDLYRLENNSPNEEAIITALLRNYGGLFTDYNFIDEAFLAQATNLKPQQVYLILK
SLSQRHILHFIPQKKTPYIRYTQRREDKEFIQLMPEVYEERKVQFEAHIQAMIRYATNDK
VCRSRQLLRYFGEENDHNCEQCDVCLAHRAEGMVVEARLNAAAQKILQLLDDGKPHFITE
LKSIELPVSELDAAIEYLTDEEYIIRLEDGCIAKS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttgacaattgataattatagggagattctccatcgctactggggctacgatgatttccgc
ggtattcagcgcgaaatcatcgagtctatcggtagtggccacgatacattaggactgatg
cctacaggtggtggtaaatccattaccttccaggtgccagctttggcacacgagggtact
tgcattgtgattaccccgctgatagccctgatgaaggaccaagttgagaatctgcgccgc
agagggattaaagcagccgctatctacagcggacttacccacgaagaaatcattgtaaca
ctcgaaaacgccatctttggcgccatcaagctgctctacgtttcaccagagcgactctca
tccgacttattccaaaccaagctccgccacatgaaggtgagctttattacggtcgacgaa
gcccactgtatttcgcaatggggttacgatttccgtccctcatacctgcagatagcccag
atacgcaaactggtgcctggcgtgcccgtattggctcttactgccacagccacgccacaa
gtggttgacgatatccaagcaaaattgacgggtgatttcaacgtgttcaagatgagcttt
gaacgcaagaatctggcttatgtggtaaggcatgctgaggataagactgaacaactgata
cacattctgaaacacgtgaagggctcggccattgtgtatgcccgcagtcgcctgcgcact
aaggagttttcgcagattatcagcgaggccggcatcacatccacattctatcatgcaggc
cttgatgccagcacgaaagatgagcgacagcgcgagtggcaggaaaacaagtatcgtgta
atggtggccaccaacgcctttggcatgggtatcgacaagcccgatgtacgcgtggtgata
catatggattgtccggatagtatcgaggcctatttccaagaggcagggcgtgctggtcgc
gatggtttcaaggcgtatgctgtgctgctgtataaccgtcacgacgaaaccaaactgaaa
aaacgcattaccgacaccttccctgataaggattacatccgccaggtttatgagcatctg
gcctattattatcagataggtgtgggctcgggttataaccatacgttcgagtttaatatc
gataagttctgccacaacttcaaccacttccctatccgtgttgattcggccctcaagatt
ctgcagcgcgcaggctatctggaatataccgaagagcaggacaacaaggcacgcgttatg
tttaccgtgagccgtaacgacctgtatcgattggaaaacaacagtccgaacgaagaggct
atcatcacggccctgctgcgcaactacggcggcctgtttaccgattacaattttatcgac
gaggctttcctggcgcaggccaccaacttaaagccacagcaggtttacctgatactcaag
agtttgtcgcagcgccatatcctgcattttattcctcagaaaaaaacgccttacatacgc
tatacccagcgacgcgaagacaaggagtttatacaactgatgcctgaggtgtacgaagag
cgcaaagtacagttcgaagcacatattcaggctatgattcgctacgctaccaacgataag
gtatgccgtagccgacaactattacgctattttggcgaggagaacgatcataattgcgag
cagtgcgatgtatgtctggctcatcgcgccgagggcatggtggttgaagcccgcctaaat
gcggctgcccagaaaatcctgcagttgctggatgatggcaaaccccactttattaccgaa
ttaaaaagcatcgagctgcccgtaagcgaactcgatgctgcaattgaatatctcacagac
gaagaatatatcatccgactggaggatggttgtatcgcaaagtcttaa
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