Xylanibacter ruminicola: PRU_2134
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Entry
PRU_2134 CDS
T01212
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pru
Xylanibacter ruminicola
Pathway
pru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PRU_2134 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pru03021
]
PRU_2134 (rpoC)
03400 DNA repair and recombination proteins [BR:
pru03400
]
PRU_2134 (rpoC)
Enzymes [BR:
pru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PRU_2134 (rpoC)
Transcription machinery [BR:
pru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PRU_2134 (rpoC)
DNA repair and recombination proteins [BR:
pru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PRU_2134 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Octopine_DH
Motif
Other DBs
NCBI-ProteinID:
ADE82442
UniProt:
D5EUW7
LinkDB
All DBs
Position
complement(2557998..2562329)
Genome browser
AA seq
1443 aa
AA seq
DB search
MAFKKDSKIKNNFTKITIGLASPEEILESSFGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHIELVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAVIYYERYVVIQPGVMAGRKDAEGNDALGSNKFDLLSEDEYSEIVENQ
LSPDNEYLDDSDPNKFIAKMGAEAIYDLLTRIDLDSLSYELRDRANSDSSVQRKNEALKR
LQVVEAFRTSVEKGINRPEWMIMKIIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRN
NRLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSDSNRPLKSLSDSLKGKQG
RFRQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKS
AKKIVDRREPVIWDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTA
FNADFDGDQMAVHLPLSNEAILEAQLLMLQSHNILNPANGAPITVPSQDMVLGLYYITKI
RPGAKGEGLTFYGPEEAIIAHNEGKCELHAQVKVIVDDIVDGQPVRHMVETSVGRVIVNG
IIPKEVGYVNKIISKKSLRDIIGAVIKNVGFAEACEFLDGIKNLGYRMAYVAGLSFNLDD
IIIPKEKAELIAKGNEEVQQITDNYNMGFITDNERYNQVIDTWTHVNNDIGNILLKQMTE
ADQGFNAVFMMLDSGARGSKDQIKQLSGIRGLMAKPQKAGAEGHQIIENPILSNFKEGMS
VLEYFISTHGARKGLADTAMKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLQCTALKSG
DEVISSLSERILGRVSVHDVINPKTGEVIVAAGEEITESIAEAIEASDIEMVEIRSVLTC
ESKKGVCMKCYGRNLATRRMVQKGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAANAAANA
SIVSKYDRAMIEFEEVRTVPFDEDGRECQMVVSRLGEMRFVDPNTKIVLSTVNVPYGSSL
YFGHGDEVAKGDKIAQWDPFNAVIVTEYAGTLKFNDVIEGITFRAETDETTGLTEKIVTE
SRDRTKVPTCDVIGADGEVIGTYSFPVGGHVVVEDGQTVSTGETLVKIPRAAAKGGDITG
GLPRVTELFEARNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEQRRYLVSLSKQIL
VQEHDAVRAGTPLSDGVITPGDILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIV
RQMMRKVQINEPGDTSFLEQEIVDKLDFAEENDRIWGKKVVTDAGDSENLQKGQIVTARK
LRDENSMLKRRDLRLVQVRDAVPATSTQILQGITRAALQTKSFMSAASFQETTKVLNEAA
IRGKVDHLVGMKENVICGHLIPAGTGLREFEKIIVGSKEEYERIQANRKNVLDFADETIL
EEK
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaagaaggattcaaaaataaagaataattttacgaagattaccatcggactt
gcttctcctgaagagattctggagagcagcttcggtgaggttaccaagccagagaccatc
aactatcgtacctataagcctgagcgcgatggtttgttctgcgagcgcatcttcggtcct
accaaggattacgagtgtgcttgcggtaagtacaagcgcatccgttataagggtattgtc
tgcgaccgttgtggtgtagaggtaacagagaagaaggttcgtcgtgagcgttctggtcac
atcgagctcgttgtgcccgtagcacacatctggtacttccgtagtcttcctaataagata
ggttacctgctgggtctgcccaccaagaagctcgatgcagttatctactacgagcgctac
gtggttatccagccaggtgtaatggcaggccgtaaggatgccgagggtaacgatgccctg
ggttctaacaagttcgacctgctctcagaggatgagtactcagagattgtagagaatcag
ctttcacccgataacgagtatctcgacgatagcgatcctaacaagttcatcgctaagatg
ggtgccgaggctatctacgacctcctgacacgtatcgatctcgactcactgtcgtacgag
ctgcgcgaccgtgctaacagcgactcttcagttcagcgtaagaacgaggctctgaagcgt
ctgcaggtagtagaggctttccgtacatcagttgagaagggcatcaaccgccccgagtgg
atgatcatgaagattatccctgttacacctcctgagctccgtcctctggtaccactggat
ggtggacgtttcgctacatctgacttgaacgacctctatcgtcgtgtcatcatccgtaac
aaccgtctgaagcgtctgatggagattaaggctcctgaggtaattctccgaaacgagaag
cgtatgctgcaggaggctgtggattcactcttcgacaacagccgtaagtcgtctgctgtt
aagagcgatagcaaccgtcctctgaagtcactctctgactcactgaaaggaaagcaggga
cgtttccgtcagaacttgctgggtaagcgtgttgactattcagcccgttcggttatcgtt
gtaggtcctgagctgaagatgggtgagtgcggtctgccaaagctgatggctgccgagctg
tataagccattcattatccgtaagctcatcgagcgcggtatcgtgaagactgttaagagc
gctaagaagattgttgaccgtcgtgagccagttatctgggatatccttgagaacgtgatg
aagggtcaccctgtactcctgaaccgtgcaccaacactgcaccgtctgggtatccaggcc
ttccagcctaagatgattgagggtaaggctatccagctgcacccactggcatgtactgcg
ttcaacgccgacttcgacggtgaccagatggctgtacacctcccattgagtaacgaggct
atcctcgaggctcagctgctcatgctgcagagccataacattctgaaccctgccaacggt
gcacctatcaccgtgccttcacaggatatggtacttggtttgtactacattaccaagatt
cgtccaggtgcaaagggtgagggacttaccttctacggtcctgaagaggctatcatcgca
cacaacgagggtaagtgcgaactgcacgcccaggttaaggttatcgttgatgatatcgtc
gacggtcagcctgttcgccacatggtagagacttcagtaggtcgtgtaatcgtaaacggc
atcattccaaaggaggttggttacgttaataagattatttctaagaagagtctgcgcgac
attatcggtgctgtaattaagaatgtaggtttcgccgaggcttgtgagttccttgatgga
atcaagaacctgggttaccgcatggcttacgtggccggtctgtcgttcaacctcgatgat
atcattattcctaaggagaaggctgagctgattgctaagggtaatgaggaggtacagcag
attaccgacaactataacatgggattcatcacagacaacgagcgttataatcaggttatt
gatacctggacccacgtcaacaacgatatcggtaacatcctgctgaagcagatgaccgag
gccgaccagggattcaacgctgtattcatgatgcttgactcaggtgcccgtggtagtaag
gaccagattaagcagctttcaggtatccgtggtctgatggctaagcctcagaaggccggt
gccgagggtcaccagattattgaaaacccaatcctttctaactttaaggagggtatgtca
gtgctcgagtactttatctctactcacggtgctcgtaagggtctggctgataccgctatg
aaaacagccgacgctggttacctgacacgtcgattggttgacgtatcgcacgatgtgatc
atcaccgaggaagactgtggtaccctgcgtggtctacagtgtacagctctgaagagtggc
gacgaggttatctcaagcctgtcagagcgtatcctgggtcgtgtatcagttcacgatgtg
atcaatcctaagaccggtgaggtgattgtagctgccggtgaggagatcaccgagtctatt
gccgaggctatcgaggcatctgatatcgagatggtcgagatccgttcagtgctcacttgt
gagtcgaagaagggtgtctgcatgaagtgttacggacgtaacctcgctacccgtcgtatg
gtacagaagggtgaggctgttggtgtgattgccgctcaggctatcggtgagccaggtaca
cagcttactctgcgtacgttccacgccggtggtgtggctgccaacgccgcagcaaatgca
agcatcgtatctaaatatgatcgcgctatgatcgagtttgaagaggttcgtaccgttcca
ttcgatgaggatggccgcgagtgtcagatggttgtaagccgtttgggtgagatgcgtttc
gttgatcctaacaccaagatcgttctctctaccgttaacgtgccttacggttcgtcactc
tactttggtcacggcgacgaggttgccaagggcgacaagattgctcagtgggacccattc
aacgccgttatcgttaccgagtacgctggtaccctgaagttcaacgatgtgatcgagggt
attaccttccgtgccgagaccgacgaaaccactggtctgactgaaaagattgttaccgag
tcgcgcgaccgtactaaggttcctacctgtgatgtaatcggtgccgatggcgaggtaatc
ggaacatatagcttccctgtaggtggacacgttgttgttgaggatggccagacagtttca
actggtgaaaccctcgttaagattccacgtgctgctgccaagggtggtgatatcaccgga
ggtctgccccgtgtaaccgagctgttcgaggctcgtaacccatctaaccctgctgttgta
tccgagatcgatggtgaggtaaccatgggtaaggtaaagcgtggtaaccgtgagattatc
gtaacctctaagactggtgagcagcgtcgttatctcgtatcgctgtcgaagcagatcctg
gtacaggagcacgatgccgtacgtgctggtacaccactctctgatggtgttatcactcca
ggcgacatcctggccattaagggtcccaccgctgtacaggagtacattgtgaacgaggtt
caggacgtataccgtctgcagggtgtaaagattaacgataagcacttcgagatcatcgtt
cgtcagatgatgcgtaaggtacagatcaacgaacctggtgatacctcgttcctcgagcag
gagattgtcgacaagctcgacttcgctgaggagaacgatcgtatctggggtaagaaggtt
gttaccgatgccggtgactctgagaacctgcagaagggtcagattgttaccgcccgcaag
ctgcgcgacgagaactctatgctgaagcgtcgtgacctccgtctggtacaggttcgtgat
gcagtgcccgctacatctactcagattctgcagggtatcacacgtgccgctcttcagact
aagtcgttcatgtcggctgcatcgttccaggagacaaccaaggtacttaacgaggctgcc
atccgtggtaaggtagatcacctggtaggtatgaaggagaacgtaatctgcggacacctg
attcctgctggtaccggtctgcgtgagttcgagaagattatcgttggttcaaaggaggag
tatgagcgcattcaggctaaccgcaagaacgttctcgacttcgctgatgagaccattctc
gaggagaaataa
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integrated database retrieval system
