Xylanibacter ruminicola: PRU_2639
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Entry
PRU_2639 CDS
T01212
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pru
Xylanibacter ruminicola
Pathway
pru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRU_2639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pru03019
]
PRU_2639
03009 Ribosome biogenesis [BR:
pru03009
]
PRU_2639
Enzymes [BR:
pru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PRU_2639
Messenger RNA biogenesis [BR:
pru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PRU_2639
Ribosome biogenesis [BR:
pru03009
]
Prokaryotic type
rRNA helicases
PRU_2639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
RRM_occluded
Motif
Other DBs
NCBI-ProteinID:
ADE81893
UniProt:
D5EXE4
LinkDB
All DBs
Position
complement(3197975..3199777)
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AA seq
600 aa
AA seq
DB search
MKTFEELGVCEQIRKAIEELGFVHPMPVQEAVIPYLLGNENDVIALAQTGTGKTAAFGIP
LLERIDTTQRYTQALVLSPTRELCLQIADDLRDFAKYMDGVHVEAVYGGAAIEPQMRALK
KGVEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEMLNMGFSDSINEIFESLSADHHT
LMFSATMSKEVERVAKKYLHDYKEIVVGSRNEGAESVNHIYYMVNAKDKYLALKRIVDFY
PRIFAIIFCRTKVETQEVADKLIKDGYNAESLHGDLNQQQRDQTMQKFRNHLTQLLVATD
VAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIVHSREKFKIRNIEKI
IGKEFVKAEIPSAEEICKKQLYKVMDQIVKTDVDDEEIAPFMQDINRYFEYIDKDELIKK
IVSLEFGKFLAYYADAPEIEPVVPEKKDRRQQSDKQKLQNKPQKGYRRLFINLGKRNGFY
PGELMQTLNRFVGGRQEVGHIDLLDSISYFEVPEKDAKKVMLQLTGIRYKGQTVRCNDAD
DASKGGERQGKGGERSAKPKRQKKDNWRELMGKAPRELKGKEPDFSEEGWAMRKPRKKKK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagaattaggcgtttgcgagcagattcgcaaagccatcgaagagtta
gggtttgtacatccgatgcctgtacaagaggcggtaataccatacctgctgggcaacgaa
aatgatgtgatagccctggcccagactggtaccggaaaaacagcagcgttcggcattcca
ttgcttgagcgcatcgacacaacgcagcgctacacacaggcactggtgctctcgccaaca
cgtgagctgtgcctgcagatagccgacgacctgcgcgactttgccaaatatatggatggc
gtgcatgtagaggccgtgtatggtggcgctgccatcgagccgcagatgcgtgctctgaaa
aagggtgtggagattatcgtggccacaccaggccgactggttgacctgatgcatcgcggc
attgcccgcctggagcaggtaactaacattgtgctcgacgaggctgatgagatgctgaat
atgggcttctcagacagtatcaacgagatattcgagtcgctctcggccgatcatcacacg
ctgatgttctcggccactatgagcaaagaggtggagcgtgtagctaagaagtatctgcac
gactacaaagagatagttgtaggcagccgcaacgagggcgccgagagcgttaaccacatc
tattatatggtgaacgccaaggataaatacctggcgctgaaacgaatcgtagacttctat
ccacgcatctttgctattatcttctgtcgcaccaaggtagagacacaagaggtggccgac
aagctgattaaagacggctacaatgccgaatcgctgcatggcgacctgaaccaacagcag
cgcgaccagacgatgcagaagttccgcaaccacctgacacagctgctggtagctaccgat
gtggctgcacgcggactggacgttgacgacttgacgcacgtgattaacttcggactgcct
gatgacatcgagagctacacccatcgctcaggtcgtacaggccgtgcgggcaagaaaggt
acatctatctcgattgtacacagtcgcgaaaagttcaagatccgtaacatcgagaagatt
atcggcaaagagtttgtaaaggccgagattccatcggccgaagagatctgcaaaaagcag
ctctataaggtgatggaccagattgttaagaccgacgttgacgatgaggagattgcccca
ttcatgcaggatatcaaccgctactttgagtatatcgacaaggacgagctgattaagaag
attgtatcgcttgagtttggcaagttcctggcctactatgccgacgcaccagagattgag
cctgtggtgcctgaaaagaaggaccgacgccagcagagcgacaagcagaagttgcagaac
aagccgcagaagggttaccgccgactgtttatcaaccttggtaagcgcaacggtttctac
ccaggcgagctgatgcagacgctgaaccgatttgtgggcggacgccaggaggtgggccat
atcgacctgctggatagcatttcgtactttgaggtgcccgaaaaggatgccaagaaggta
atgctgcagctgacaggtatccgctacaagggtcagacggtgcgttgcaacgacgccgac
gacgccagcaagggcggcgagcgacagggcaagggcggcgagcgttcagccaagcccaag
cgccagaagaaagataactggcgcgagctgatgggcaaggcaccacgcgaactgaaaggc
aaggagcccgactttagcgaagagggctgggccatgcgcaaaccacgaaagaaaaagaag
taa
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