KEGG   Candidatus Phytoplasma rubi: RS022_01340
Entry
RS022_01340       CDS       T08734                                 
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
prub  Candidatus Phytoplasma rubi
Brite
KEGG Orthology (KO) [BR:prub00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    RS022_01340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:prub03021]
    RS022_01340
Transcription machinery [BR:prub03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     RS022_01340
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r1_2
Other DBs
NCBI-ProteinID: WAN63131
UniProt: A0ABY7BTE2
LinkDB
Position
complement(115502..116767)
AA seq 421 aa
MNLRKNFKKIYKKHHLKIEKENNSFIITPVEQKMQWLEKFYKNKDFFNSRLIKSIIMYEK
KFKNKRNNSKQKNSSKNDLFNKLYSQNNDMYNKEESQENLNLEQIANSIKVNDPVKMYLK
EIGQIPLLTLEEEKIKSKMVYEGLIAKKQLEQYKKQEIELTYEQLEEINKKIKDAEQAKS
KLIEANYRLVVSIAKRYIGRKILFLDLIQEGNMGLMRAVDKFDYTKGFKFSTYATWWIRQ
AITRAVADQARTIRIPVHIIETMNKISRCLGKLTQDLLRKVDNQELAMNMNIKKKEIVDI
QMIEKETISLETSSREEVDSSLGDFINDPNTISPHEYMLQEMLKKTLDESLEEVLTDKEE
QVLKMRYGLTDGHIYTLEELGNKFNVTRERIRQIEAKALRRLRSPSKQNKLRTLYNNIIK
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaagaaaaaattttaaaaaaatctataaaaaacatcatttaaaaatagaaaaa
gaaaataattcatttattattactcctgttgaacaaaagatgcaatggttagaaaaattt
tataaaaataaagatttttttaactcaagacttattaaatccataatcatgtatgaaaaa
aaattcaaaaataaaagaaataattctaaacaaaaaaattcatctaaaaatgaccttttt
aataaattatattcacaaaataatgacatgtataataaagaagaatctcaagaaaattta
aatttggaacaaattgctaattctattaaagtaaacgatcctgttaaaatgtatcttaaa
gaaataggtcaaattcctttattaactttagaagaagaaaaaattaaatccaaaatggtt
tatgaaggattgatagctaaaaaacaattagaacaatataaaaaacaagaaatagaatta
acatatgaacaattagaagaaataaataaaaagataaaagacgccgaacaagctaaaagt
aaattaatcgaagctaattatcgtttagtagtctcaatagctaaacgttatataggaaga
aagattttatttttagatttaattcaagaaggaaatatgggcttaatgagagcagtcgat
aagttcgattatactaaaggctttaaattttctacttatgctacttggtggataagacaa
gcgattacaagagctgtagctgatcaagctagaacaattcgaattccagttcatattata
gaaacaatgaataaaatttctcgttgtttaggaaaattaacacaagatttattgcgtaaa
gttgataatcaagaattagctatgaatatgaatataaaaaaaaaagaaattgttgatatt
caaatgatagaaaaagaaactatttctttagaaacatcatctagagaagaagttgattct
tctttaggagattttataaatgatcctaatactatttctcctcatgaatatatgttgcaa
gaaatgttaaaaaagactttagatgaatctttagaagaagttttaacagataaagaagaa
caagttttaaaaatgcgttatggccttacagatggacatatttatactttagaagaatta
ggtaataaatttaacgttactcgtgaaagaattcgtcaaatagaagctaaagctttaaga
cgtttaagaagtccttctaaacaaaataaattaagaacattatataataatattattaaa
aaatga

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