Candidatus Phytoplasma rubi: RS022_08920
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Entry
RS022_08920 CDS
T08734
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
prub
Candidatus Phytoplasma rubi
Brite
KEGG Orthology (KO) [BR:
prub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prub03019
]
RS022_08920
03009 Ribosome biogenesis [BR:
prub03009
]
RS022_08920
Enzymes [BR:
prub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RS022_08920
Messenger RNA biogenesis [BR:
prub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RS022_08920
Ribosome biogenesis [BR:
prub03009
]
Prokaryotic type
rRNA helicases
RS022_08920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Zot
Motif
Other DBs
NCBI-ProteinID:
WAN63679
LinkDB
All DBs
Position
complement(735519..736814)
Genome browser
AA seq
431 aa
AA seq
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MENYIKQKLKQLKFEKVTPIQKEVFENFSKPFNLVGSAPTGTGKTHAYLLPILSQIDWDK
NIIQGVIIVPTNELIFQVFKMIKEIEQRTSQVKIFYGGMDKQKILKSLEKKQPPLIITTL
NKLIEYITVFKKLNIFKSSFLVIDEADTLFEQNSLALLDVLLAKWKPKILLFSASITKNM
NPFIQKYFGKSLFLDVHSQQKLNLTYYLLQSFPNKRLNDLIHFMKNLNPYSALIFVSKKE
EQSKIYEYLKGYNFNILNFSSDLSVKKRKYLMSEIKKNKYQYILTSDLCARGLDLDIEWV
IHYNLPSKNLEFFQHRSGRTGRMGKEGKVVLFYDDKEQVSLIKIQKNYNIVFKKIALTAN
GFSEIKITNSQNINNKKNHINKKNNINKKNNINKKNNINKRTFSFSKKKKFISKTNSVIH
KKKGIFSRKND
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattatattaaacaaaaattaaaacaattaaaatttgaaaaagtaacacctatt
caaaaagaagtatttgaaaatttttcaaaaccttttaatttggtaggaagtgctcccaca
ggtacaggaaaaactcatgcttatttattgccaattctaagccaaattgattgggataaa
aatattattcaaggggttattattgttccgactaatgaattaatttttcaagtctttaaa
atgatcaaagaaatcgaacaaagaacttctcaagtaaaaattttttacggaggcatggat
aaacaaaaaattttaaaaagtttagaaaaaaaacaacctcctttgattataactacttta
aataaattaattgaatatattactgtttttaaaaaacttaatatttttaaatcttctttt
ttagttatagacgaagcggatactttatttgaacaaaattcattagctttattagatgtt
ttattagcaaaatggaaacctaaaattttattattttctgcttcaattaccaaaaatatg
aatccttttatacaaaaatatttcggaaaatcattatttttagatgttcattctcaacaa
aaattaaatttaacatattatcttttacaaagttttcctaataaacgtttgaacgattta
attcatttcatgaaaaatttaaatccttattcggctttaatttttgtttctaaaaaagaa
gaacaatctaaaatatatgaatatttaaagggttataattttaatattttaaatttttct
tctgatttaagtgtaaaaaaaagaaaatatttaatgtcagaaattaaaaaaaataaatat
caatatattttgactagtgatttatgtgctagaggtttagacttagatattgagtgggtt
attcactataatttaccttcaaaaaatttagaattttttcaacatcgtagcggaagaaca
ggacgaatggggaaagaaggtaaagtagttcttttttacgatgataaagaacaagtttct
ttaataaaaattcaaaaaaattataatattgtttttaaaaaaatagctttaactgcgaat
ggttttagcgaaataaaaataacaaattctcaaaatattaataacaagaaaaatcatatt
aataagaaaaataatattaataagaaaaataatattaataagaaaaataatattaataag
agaactttttctttttcgaaaaagaaaaagtttatttcaaaaacaaattctgtaattcat
aaaaagaaaggtattttttcaagaaaaaatgattaa
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