Paenibacillus sp. RUD330: CIC07_01265
Help
Entry
CIC07_01265 CDS
T11330
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prud Paenibacillus sp. RUD330
Pathway
prud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIC07_01265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prud03019
]
CIC07_01265
03009 Ribosome biogenesis [BR:
prud03009
]
CIC07_01265
Enzymes [BR:
prud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIC07_01265
Messenger RNA biogenesis [BR:
prud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIC07_01265
Ribosome biogenesis [BR:
prud03009
]
Prokaryotic type
rRNA helicases
CIC07_01265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
SecA_DEAD
AAA_19
CMS1
DUF5876
Motif
Other DBs
NCBI-ProteinID:
ASS64890
LinkDB
All DBs
Position
complement(2113198..2114937)
Genome browser
AA seq
579 aa
AA seq
DB search
MSSSFTALGIRTELAGRLAQEGISEPTPVQETAIPVLLQGKDVIVQAQTGTGKTLAFALP
ALQQINPGKTYTQALILTPTRELAIQITGELAKLAPVLGITVLAAYGGQDVESQIRKLKN
AAPHVVVATPGRLLDHLRRETVTLSSIRMLVLDEADQMLHMGFLSEVEAIIDQCSIKRQT
MLFSATMPDAVKQLAARYMDVPQDIRIKSAAVTLDAIEQRVVITTDRNKQPLLLRLLETE
NPYLAVVFCRTKLRAKKLTEALQEAGVPADELHGDLTQAKREAVMKRFRSARLQVLVATD
VAARGLDVEGVTHVFNYDAPADGDTYIHRIGRTGRAGETGKAITLATARDRASLEAVEQK
IRASIKRIQGSEYGIGLEAGTERFDAEPRSPRTGGRSSGGRKAPAGGRGSSRPGSRDSGG
GRSGGRANAGGGRSGSRTEAAPAERAGRFAAKPAGRPGAGAASSAGAKPVRSWTDESASS
ARPSARGRGPAQGRSAGTSGRPAFPGHGFNPEGSGDSGTGRGNRRGAAGAGRGASGGSKG
SRGASGAGRGSSSGASGSAGSARRGGKPGSSGPGRRSGR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatcattcaccgccctcggcatcaggaccgagcttgccggacgcctggcgcag
gaaggcatctcggagccgactccggtgcaggagacagccattcccgtccttctccaagga
aaggacgttatcgtacaagctcagaccggcacaggcaaaacgctcgcatttgccctgcct
gccctccaacagatcaatccgggcaaaacatatacgcaggctctgattctcacgccgacg
cgagagctcgccatacagatcacgggcgagttggccaagctggcccctgtgctcggcatt
accgtgctggccgcttatggcgggcaagacgtcgagtcccagatccgcaagctcaagaat
gccgccccgcatgtcgtcgtggcgactccgggcaggctgctcgaccatctgcgtcgggag
acggtcacgctgagctccatccgcatgctcgtgctcgacgaggccgaccagatgctccat
atgggcttcctgtccgaagtggaagccattatcgaccaatgctccatcaagcgccagacg
atgctgttctcggccaccatgccggatgctgtcaagcagctggcagcccgctacatggac
gtgcctcaggatatccgcatcaagagcgcggccgtgacgctcgacgccatcgagcagcgc
gtcgtcatcacgacggaccgcaacaagcagccgcttctgctccgcttgctcgagacggag
aatccgtatcttgcggtcgttttctgccgcacgaagctgcgcgccaagaagcttaccgaa
gcgctgcaggaagccggcgttcccgccgacgagctgcacggcgatctgacgcaggccaag
cgcgaagccgtcatgaagcggttccgctcggctaggctgcaggtgctcgtcgcgacggac
gtcgcggctcgcggtctcgacgtcgaaggcgtcacccatgtgttcaactacgacgcccct
gccgacggcgacacctacatccaccggatcggccggacaggacgtgccggagaaaccggc
aaagcgatcacgctcgccactgcccgcgaccgtgcgagcctggaggctgtggagcaaaaa
atccgcgcctccatcaagcgcatccaaggctcggagtacggcatcggactcgaagccggc
accgagcgctttgatgccgagccgcgctcccctcgcacgggaggacgcagctcgggcgga
cgcaaggctccggccggcggccgcggctccagccgccctggctcgcgcgatagcggcgga
ggacgctcgggaggacgtgccaatgccggaggcggccgttccggttcgcggacggaagcc
gctcctgccgagcgggcgggccgcttcgcagccaagccggcaggaaggcctggcgccggt
gccgcctcctcggcaggagccaagccggtccgcagctggaccgacgagtccgcttcgtcc
gcccgcccgtcggcccgcggacgcggtccggctcaaggaaggtctgccggaacatcggga
cggcccgcattccctggccatggcttcaatccggagggaagcggcgattccggcactggc
cgcggcaaccgccgcggcgctgccggagcaggacgcggagcttcgggcggcagcaaaggc
agccgcggagcttccggtgcagggcgcggctcatccagcggcgcctctggcagcgcgggc
tctgcgcgccgcggaggcaagccgggcagttccggtcccggccgccgcagcggacgctga
DBGET
integrated database retrieval system
